LOC118944704 (LOC106581256)


Basic Information

Item Value
gene id LOC118944704
gene name LOC106581256
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 27811641 ~ 27813263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965084.1
actctgtggtttctgatgcacaaagcagagggtcatctccaaccggaactgtaactgatataggcagtctactgagtggtaagtcctaccctctgccatctttctccgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGCCAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCTTCGCTTTCAACCCCATCCACTGACAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtggtgagacttctgtcaaaaatccaaacccaaactgatctgtacccaactgacgtcacacgcacgtcacaagacctgattccaaaagttatagctgccttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccATTCATGATGGGAAACAAGAAGGATTCCAATAAGAAATCCCGCCATTCTGAATCCAAAGACCAGACTACTGCTGAAGATATCATGTTGGCACATCCTGCCACATTTGGACTCCCAGAgggtcttccctccacctctcaacaGGAGAAGCCTCGCAAACGTCCCCTTCTAATCAGGATGTTTTCCACCATCTCCATAGGCTTATCCAAGCCATTCAAACGGTTTTCAAAGCAAGCTTAATACAACAATTTCCTTTAATACAGTAATATTTGCATTGAATTGATGGCCTTTGTCTTCTTTAGTGTTGCCCTGTTAACACATTTGATTAGAAAATACATAgtatatttagtttagtttattatgcAGTCATAGTCACGGTGTAGGCTTAACAAAGTAATGTTGTCC

Function

NR:

description
uncharacterized protein LOC110507890

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965084.1 True 1169 mRNA 0.45 3 27811641 27813263

Neighbor

gene id symbol gene type direction distance location
LOC118944697 LOC106581256 coding downstream 13042 27796265 ~ 27798599 (-)
LOC118944650 NA coding downstream 25227 27783271 ~ 27786414 (-)
LOC118944699 LOC106581256 coding downstream 31175 27778804 ~ 27780466 (-)
LOC118944708 LOC106581256 coding downstream 36978 27773351 ~ 27774663 (-)
LOC118944701 LOC106581256 coding downstream 48315 27759702 ~ 27763326 (-)
LOC118944706 NA coding upstream 2874 27816137 ~ 27823761 (-)
LOC118944705 LOC106581256 coding upstream 3850 27817113 ~ 27818709 (-)
LOC118944702 LOC106581256 coding upstream 23898 27837161 ~ 27839026 (-)
LOC118944651 LOC106581256 coding upstream 26302 27839565 ~ 27844424 (-)
LOC118944703 LOC106581256 coding upstream 38070 27851333 ~ 27855315 (-)
G2070342 NA non-coding downstream 7987 27753068 ~ 27803654 (-)
G2070346 NA non-coding downstream 18162 27770159 ~ 27793479 (-)
G2070343 NA non-coding downstream 22598 27755443 ~ 27789043 (-)
G2070339 NA non-coding downstream 67386 27743988 ~ 27744255 (-)
G2070338 NA non-coding downstream 68860 27742552 ~ 27742781 (-)
G2070353 NA non-coding upstream 19572 27832835 ~ 27833495 (-)
G2070354 NA non-coding upstream 20630 27833893 ~ 27921841 (-)
LOC118944700 LOC106581256 non-coding upstream 72229 27883413 ~ 27886802 (-)
G2070374 NA non-coding upstream 86794 27900057 ~ 27900680 (-)
G2070420 LOC107387520 non-coding upstream 181191 27994454 ~ 27994718 (-)
G2069842 NA other downstream 271032 27540000 ~ 27540609 (-)
LOC110507887 LOC106581252 other downstream 350993 27448217 ~ 27500051 (-)
LOC110507886 LOC106581251 other downstream 364143 27428483 ~ 27447544 (-)
LOC110507885 LOC106581250 other downstream 407263 27333102 ~ 27404380 (-)
G2068676 NA other downstream 1486162 26325130 ~ 26325479 (-)
LOC118944698 LOC106581256 other upstream 55961 27866010 ~ 27871529 (-)
LOC118944653 LOC106581256 other upstream 59446 27872709 ~ 27889358 (-)
G2070530 NA other upstream 357575 28170838 ~ 28172542 (-)
G2070744 NA other upstream 710683 28523946 ~ 28524550 (-)
G2071247 LOC106581281 other upstream 1128091 28941354 ~ 28942728 (-)

Expression


Co-expression Network