LOC118944703 (LOC106581256)


Basic Information

Item Value
gene id LOC118944703
gene name LOC106581256
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 27851333 ~ 27855315 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965081.1
AGGGAAAGCATGTCTGCAATAGTGGATACCATCATAAAGGAGGTACatccagaggaagaaggggaggttgCATTCCACCCTGATCTATCAGCTGCAATAGCAAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcacgtgatcttactcaccaagtcaaccgcatcatttctgagagcaacttgacccctctggttctgacagtggcggctggaaagagtgcatccgatacagtccttactgagctgaagaggaatgacaagacggtggggaagcccacagcttacaagctggttcagctttttgcagaggagtctgtgaagcgcctcttgcttcctagccttgtgccctctacagcttcaatgagtttggctcagggaGTTAGTGTGCCGGCTAGCGTATCTGAAGATAGGATTTCATGTTCTTTTTCTACATCAGCATTTAGTGACACAGTCAGCCTGTTTACCAAAGTAATGGTAAGCCAGGTCATGGACTCTGTGGTTTCTGATGCACAAAGCATAGGGGCATCTCCAACCGGAACTTTAACTGATATAGGCAGTCTACTGAGTGGTAAGTCCTACCCTCTGCCATCTTTCTCCgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGCCAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCTTCGCTTTCAACCCCATCCACTGACAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtggtgagacttctgtcaaaaatccaaacccaaactgatctgtacccaactgacgtcacacgcacgtcacaagacctgattccaaaagttatagctgccttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGATGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccATTCATGATGGGAAACAAGAAGGATTCCAATAAGAATTCCCGCCATTCTGAATCCAAAGACCAGACTACTGCTGAAGATATCATGTCTTTTACCTTCGACATCAACAAGCGACGCACGGGCTGGTCCTGCAGACTCCCACGCCCATGGcccaggagaaggctgggggCCACCTGCTCACTCACGTCCCAGCCATCTCCTTTGAGACCGACTCTACTGTGGAGTGCACCTCCAAGAGGACTCCGGAAGAGAGGGACCGGGTGAAGGTTAAACTGGCCAACATGGCCTTGATGGGAAGGATCAAAAGTCTTGGCTGTGAAATGCCCATTATGTGTGATTATCGAATTGATCATTTTCCACTTTTGAAACAACAATGGGAAAGACAGGGTTTATAGCAAAGGTTGCTCAGATTGGGCTTTTGGAAAAATTGGGAGAATGAAAGTGCACTCCTGATTCAGAGAGAAAGATCCAGCTTAATCATCCATACCATTgtttaaattacaataaaaaaacattcaaactgttcctgagttttgaaagacagagaaaggaaaacatCATTATCTTCAGTCTGTTCACACCTGTTCACACAAGTCCTACTGTCCACAATCTCAGGGTTCTTCAATACAAACACACCTGTTTCAGAAAACCTGATCACTTTCACATTCGAACAATGTTTGTAGGATACTTTTCAATAACTCAATAAATGTAAGTGTTGAAACCATACATAGCTGGTAACTTGAGCTCGGCAGAGTAGTTTTGACCTGTGTCCAGATGCAGTCATTTATGTTGTCTAAAGACAATTTGTCTCTTAtaacaatgttatttttctgaataatctaatttaattgactggtaggtagtcactaactatttgtagcatgtgttcctctgtttattgatatttacatggtgtgtatgtgttaagatgttaagtaattaatgttgatattatccaaagggtttttaactgaaatgttaaatgtatttaaaaaatggcAGAATCAAACAGTATTGGAATAGTGACTTGTATTTTGCATCTAGAAGTGTAAGAATTTTAGAAGAATGCTATTTCATCAGTCAAATGTTGCACTGTTTGATAAGACAGGGTAAAGAAAACCTCAATTTTAATTAGTTTAGTTGTGAGTTTGACATTTTACCACAAGAAGTCACTATAATACTATACGTTATCAAACA
>XM_036965079.1
AGGGAAAGCATGTCTGCAATAGTGGATACCATCATAAAGGAGGTACatccagaggaagaaggggaggttgCATTCCACCCTGATCTATCAGCTGCAATAGCAAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcacgtgatcttactcaccaagtcaaccgcatcatttctgagagcaacttgacccctctggttctgacagtggcggctggaaagagtgcatccgatacagtccttactgagctgaagaggaatgacaagacggtggggaagcccacagcttacaagctggttcagctttttgcagaggagtctgtgaagcgcctcttgcttcctagccttgtgccctctacagcttcaatgagtttggctcagggaGTTAGTGTGCCGGCTAGCGTATCTGAAGATAGGATTTCATGTTCTTTTTCTACATCAGCATTTAGTGACACAGTCAGCCTGTTTACCAAAGTAATGGTAAGCCAGGTCATGGACTCTGTGGTTTCTGATGCACAAAGCATAGGGGCATCTCCAACCGGAACTTTAACTGATATAGGCAGTCTACTGAGTGGTAAGTCCTACCCTCTGCCATCTTTCTCCgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGCCAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCTTCGCTTTCAACCCCATCCACTGACAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtggtgagacttctgtcaaaaatccaaacccaaactgatctgtacccaactgacgtcacacgcacgtcacaagacctgattccaaaagttatagctgccttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGATGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccATTCATGATGGGAAACAAGAAGGATTCCAATAAGAATTCCCGCCATTCTGAATCCAAAGACCAGACTACTGCTGAAGATATCATGTTGGCACATCCTGCCACATTTGGACTCCCAGAgggtcttccctccacctctcaacaGGAGAAGCCTCGCAAACGTCCCCTTCTAATCAGGATGTTTTCCACCATCTCCATAGGCCTATCCAAGCCATTCAAACGGTTTTCAAACTTTTACCTTCGACATCAACAAGCGACGCACGGGCTGGTCCTGCAGACTCCCACGCCCATGGcccaggagaaggctgggggCCACCTGCTCACTCACGTCCCAGCCATCTCCTTTGAGACCGACTCTACTGTGGAGTGCACCTCCAAGAGGACTCCGGAAGAGAGGGACCGGGTGAAGGTTAAACTGGCCAACATGGCCTTGATGGGAAGGATCAAAAGTCTTGGCTGTGAAATGCCCATTATGTGTGATTATCGAATTGATCATTTTCCACTTTTGAAACAACAATGGGAAAGACAGGGTTTATAGCAAAGGTTGCTCAGATTGGGCTTTTGGAAAAATTGGGAGAATGAAAGTGCACTCCTGATTCAGAGAGAAAGATCCAGCTTAATCATCCATACCATTgtttaaattacaataaaaaaacattcaaactgttcctgagttttgaaagacagagaaaggaaaacatCATTATCTTCAGTCTGTTCACACCTGTTCACACAAGTCCTACTGTCCACAATCTCAGGGTTCTTCAATACAAACACACCTGTTTCAGAAAACCTGATCACTTTCACATTCGAACAATGTTTGTAGGATACTTTTCAATAACTCAATAAATGTAAGTGTTGAAACCATACATAGCTGGTAACTTGAGCTCGGCAGAGTAGTTTTGACCTGTGTCCAGATGCAGTCATTTATGTTGTCTAAAGACAATTTGTCTCTTAtaacaatgttatttttctgaataatctaatttaattgactggtaggtagtcactaactatttgtagcatgtgttcctctgtttattgatatttacatggtgtgtatgtgttaagatgttaagtaattaatgttgatattatccaaagggtttttaactgaaatgttaaatgtatttaaaaaatggcAGAATCAAACAGTATTGGAATAGTGACTTGTATTTTGCATCTAGAAGTGTAAGAATTTTAGAAGAATGCTATTTCATCAGTCAAATGTTGCACTGTTTGATAAGACAGGGTAAAGAAAACCTCAATTTTAATTAGTTTAGTTGTGAGTTTGACATTTTACCACAAGAAGTCACTATAATACTATACGTTATCA
>XM_036965080.1
AGGGAAAGCATGTCTGCAATAGTGGATACCATCATAAAGGAGGTACatccagaggaagaaggggaggttgCATTCCACCCTGATCTATCAGCTGCAATAGCAAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcacgtgatcttactcaccaagtcaaccgcatcatttctgagagcaacttgacccctctggttctgacagtggcggctggaaagagtgcatccgatacagtccttactgagctgaagaggaatgacaagacggtggggaagcccacagcttacaagctggttcagctttttgcagaggagtctgtgaagcgcctcttgcttcctagccttgtgccctctacagcttcaatgagtttggctcagggaGTTAGTGTGCCGGCTAGCGTATCTGAAGATAGGATTTCATGTTCTTTTTCTACATCAGCATTTAGTGACACAGTCAGCCTGTTTACCAAAGTAATGGTAAGCCAGGTCATGGACTCTGTGGTTTCTGATGCACAAAGCATAGGGGCATCTCCAACCGGAACTTTAACTGATATAGGCAGTCTACTGAGTGGTAAGTCCTACCCTCTGCCATCTTTCTCCgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGCCAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCTTCGCTTTCAACCCCATCCACTGACAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtggtgagacttctgtcaaaaatccaaacccaaactgatctgtacccaactgacgtcacacgcacgtcacaagacctgattccaaaagttatagctgccttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGATGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccATTCATGATGGGAAACAAGAAGGATTCCAATAAGAATTCCCGCCATTCTGAATCCAAAGACCAGACTACTGCTGAAGATATCATGTTGGCACATCCTGCCACATTTGGACTCCCAGAgggtcttccctccacctctcaacaGGAGAAGCCTCGCAAACGTCCCCTTCTAATCAGGATGTTTTCCACCATCTCCATAGGCCTATCCAAGCCATTCAAACGCTTTTACCTTCGACATCAACAAGCGACGCACGGGCTGGTCCTGCAGACTCCCACGCCCATGGcccaggagaaggctgggggCCACCTGCTCACTCACGTCCCAGCCATCTCCTTTGAGACCGACTCTACTGTGGAGTGCACCTCCAAGAGGACTCCGGAAGAGAGGGACCGGGTGAAGGTTAAACTGGCCAACATGGCCTTGATGGGAAGGATCAAAAGTCTTGGCTGTGAAATGCCCATTATGTGTGATTATCGAATTGATCATTTTCCACTTTTGAAACAACAATGGGAAAGACAGGGTTTATAGCAAAGGTTGCTCAGATTGGGCTTTTGGAAAAATTGGGAGAATGAAAGTGCACTCCTGATTCAGAGAGAAAGATCCAGCTTAATCATCCATACCATTgtttaaattacaataaaaaaacattcaaactgttcctgagttttgaaagacagagaaaggaaaacatCATTATCTTCAGTCTGTTCACACCTGTTCACACAAGTCCTACTGTCCACAATCTCAGGGTTCTTCAATACAAACACACCTGTTTCAGAAAACCTGATCACTTTCACATTCGAACAATGTTTGTAGGATACTTTTCAATAACTCAATAAATGTAAGTGTTGAAACCATACATAGCTGGTAACTTGAGCTCGGCAGAGTAGTTTTGACCTGTGTCCAGATGCAGTCATTTATGTTGTCTAAAGACAATTTGTCTCTTAtaacaatgttatttttctgaataatctaatttaattgactggtaggtagtcactaactatttgtagcatgtgttcctctgtttattgatatttacatggtgtgtatgtgttaagatgttaagtaattaatgttgatattatccaaagggtttttaactgaaatgttaaatgtatttaaaaaatggcAGAATCAAACAGTATTGGAATAGTGACTTGTATTTTGCATCTAGAAGTGTAAGAATTTTAGAAGAATGCTATTTCATCAGTCAAATGTTGCACTGTTTGATAAGACAGGGTAAAGAAAACCTCAATTTTAATTAGTTTAGTTGTGAGTTTGACATTTTACCACAAGAAGTCACTATAATACTATACGTTATC

Function

NR:

description
uncharacterized protein LOC110507890

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965081.1 False 2463 mRNA 0.43 3 27851333 27855315
XM_036965079.1 False 2601 mRNA 0.44 4 27851337 27855315
XM_036965080.1 True 2591 mRNA 0.44 4 27851338 27855315

Neighbor

gene id symbol gene type direction distance location
LOC118944651 LOC106581256 coding downstream 6909 27839565 ~ 27844424 (-)
LOC118944702 LOC106581256 coding downstream 12307 27837161 ~ 27839026 (-)
LOC118944706 NA coding downstream 27572 27816137 ~ 27823761 (-)
LOC118944705 LOC106581256 coding downstream 32624 27817113 ~ 27818709 (-)
LOC118944704 LOC106581256 coding downstream 38070 27811641 ~ 27813263 (-)
LOC118944652 LOC106581256 coding upstream 1214 27856529 ~ 27860168 (-)
LOC118944698 LOC106581256 coding upstream 10695 27866010 ~ 27871529 (-)
LOC118944653 LOC106581256 coding upstream 17625 27872709 ~ 27889358 (-)
LOC118944700 LOC106581256 coding upstream 28098 27883413 ~ 27886802 (-)
LOC118944711 NA coding upstream 35262 27890577 ~ 27891337 (-)
G2070353 NA non-coding downstream 17838 27832835 ~ 27833495 (-)
G2070342 NA non-coding downstream 47679 27753068 ~ 27803654 (-)
G2070346 NA non-coding downstream 57854 27770159 ~ 27793479 (-)
G2070343 NA non-coding downstream 62290 27755443 ~ 27789043 (-)
G2070339 NA non-coding downstream 107078 27743988 ~ 27744255 (-)
G2070374 NA non-coding upstream 44742 27900057 ~ 27900680 (-)
G2070420 LOC107387520 non-coding upstream 139139 27994454 ~ 27994718 (-)
G2070424 NA non-coding upstream 141916 27997231 ~ 27997702 (-)
G2070425 NA non-coding upstream 142931 27998246 ~ 27998476 (-)
G2069842 NA other downstream 310724 27540000 ~ 27540609 (-)
LOC110507887 LOC106581252 other downstream 390685 27448217 ~ 27500051 (-)
LOC110507886 LOC106581251 other downstream 403835 27428483 ~ 27447544 (-)
LOC110507885 LOC106581250 other downstream 446955 27333102 ~ 27404380 (-)
G2068676 NA other downstream 1525854 26325130 ~ 26325479 (-)
G2070530 NA other upstream 315523 28170838 ~ 28172542 (-)
G2070744 NA other upstream 668631 28523946 ~ 28524550 (-)
G2071247 LOC106581281 other upstream 1086039 28941354 ~ 28942728 (-)

Expression


Co-expression Network