LOC118944698 (LOC106581256)


Basic Information

Item Value
gene id LOC118944698
gene name LOC106581256
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 27866010 ~ 27871529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965072.1
aagtcaaagcaacaacggctcaagccaaaaagaccctcagccatattctggtttcaattcagaaagagctgtcaaaatctgaccaaaCGGTGACTGCACTTTCACAAATAGAGAATGTGGTTGGAATGATGCTGAAGGATGTTGAAAGGGTAAGCAGTGAATGTGGTGAGGAACTGATCTATCAAGCGCCACAGCGTtcttcctcctcgttgtcatcctcatctgccagatcaaagaagtcagagtgggaattttcactccctggcactcccatctcTTCTGATTTACCAGAGAGTATTACTCAGCCCATTGTGAGATGCTCAGTCATCGACATGGGCAAATCTACTAAGCCAAAAACATCGGTGTGTGATGCCAGGGAAAGCATGTCTGCAATAGTGGATACCATCATAAAGGAGGTACatccagaggaagaaggggaggttgCATTCCACCCTGATCTATCAGCTGCAATAGCAAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcacgtgatcttactcaccaagtcaaccgcatcatttctgagagcaacttgacccctctggttctgacagtggcggctggaaagagtgcatccgatacagtccttactgagctgaagaggaatgacaagacggtggggaagcccacagcttacaagctggttcagctttttgcagaggagtctgtgaagcgcctcttgcttcctagccttgtgccctctacagcttcaatgagtttggctcagggaGTTAGTGTGCCGGCTAGCGTATCTGAAGATAGGATTTCATGTTCTTTTTCTACATCAGCATTTAGTGACACAGTCAGCCTGTTTACCAAAGTAATGGTAAGCCAGGTCATGGACTCTGTGGTTTCTGATGCACAAAGCAGAGGGTCATCTCCAACCGGAACTGTAACTGATATAGGCAGTCTACTGAGTGGTAAGTCCTACCCTCTGCCATCTTTCTCCACCATCAGCATGACAACAAgtgggacctccaatgctgcacgAGGCTTTGAGGCCAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGACAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtggtgagacttctgtcaaaaatccaaacccaaactgatctgtacccaactgacgtcacacgcacgtcacaagacctgattccaaaagttatagctgccttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccATTCATGATGGGAAACAAGAAGGATTCCAATAAGAAATCCCGCCATTCTGAATCCAAAGACCAGACTACTGCTGAAGATATCATGTTGGCACATCCTGCCACATTTGGACTCCCAGAgggtcttccctccacctctcaacaggagaagcctcgcaaacgtccccttctaatcaggatgttttccaccatctccataggcctatccaagccattcaaacgCTTTTACCTTCGACATCAACAAGCGACGCACGGGCTGGTCCTGCAGACTCCCACGCCCATGGcccaggagaaggctgggggCCACCTGCTCACTCACGTCCCAGCCATCTCCTTTGAGACCGACTCTACTGTGGAGTGCACCTCCAAGAGGACTCCGGAAGAGAGGGACCGGGTGAAGGTTAAACTGGCCAACATGGCCTTGATGGGAAGGATCAAAAGTCTTGGCTGTGAAATGCCCATTATGTGTGATTATCGAATTGATCATTTTCCACTTTTGAAACAACAATGGGAAAGACAGGGTTTATAGCAAAGGTTGCTCAGATTGGGCTTTTGGAAAAATTGGGAGAATGAAAGTGCACTCCTGATTCAGAGAGAAAGATCCAGCTTAATCATCCATACCATTgtttaaattacaataaaaaaaacattcaaactgttcctgagttttgaaagacagagaaaggaaaacatCATTATCTTCAGTCTGTTCACACCTGTTCACACAAGTCCTACTGTCCACAATCTCAGGGTTCTTCAATACAAACACACCTGTTTCAGAAAACCTGATCACTTTCACATTCGAACAATGTTTGTAGGATACTTTTCAATAACTCAATAAATGTAAGTGTTGAAACCATACATAGCTGGTAACTTGAGCTCGGCAGAGTAGTTTTGACCTGTGTCCAGATGCAGTCATTTATGTTGTCTAAAGACAATTTGTCTCTTAtaacaatgttatttttctgaATAATCTAATTTAATTGACTGGTGGGTAGTCACTAACTATTTGTAGCATGTGTTCCTCTGTTTATTGATATTtacatggtgtgtatgtgttaagATGTTAAGTAATTAATGTTGATATTATCCAAAGGGTTTTTAACTGAAATGTTAAATGTTGGTGTCTCGATCTCAGACATTTACGCTCATATTTGTAAATAGTATTTCAAAAATGGCAGAATCAAACAGTATTGGAATAGTGACTTGTATTTTGCATCTAGAAGTGTAAGAATTTTAGAAGAATGCTATTTCATCAGTCAAATGTTGCACTGTTTGATAAGACAGGGTAAAGAAAACCTCAATTTTAATGAGTTTAGTTGTGAGTTTGACATTTTACCACAAGAAGTCACTATAATACTATACGTTATCAAACAGGGTTGTGCTGAAAATCAAATGAACTACAGTCAAATTAATTATTTGCAACTAAGAGTAAGATTAAAAAAGACATGTATAACTTACTTTcttgataaaatacattctaaaatgTCAATATATGTGATTTCTGAGTATGTAGTGCACATATCTTTTTAAGGCCCAAAGCAgacgtttttatatcaatatcaaatcatttctgggtaacaattaagtaccttactgtaatagattacgatgaaaatggtcaaaaatgtatttttttgcaaaaaaaactttctcaagcaataattttgctaggactgtctgggagtggtcagtgtggaggggaaattaaaactagctgttattggcactctctttgtcgttggtctataaaccaatttacacatggtgatgtcgccatggaaagccaaaactctggcccatgcaaacctgctgattagaaggtgctGTATAGATGTGAGAAACTCTCTTTTCATGGCACTTCAATATCGAAGTgaatttttcgtagcaggttaggaaactgaggttaaggttaggaaaagggttagggttagtgaaaatgctctccaaaccttctacgaaaattactttgcattgaagtgctgtgaaaataatgtgtccctgctcaggtgttgcatgcatcaaccaatggttgtgtgccaagtcatccattgtgtcatcgactgacagattgctataacatatgatgtggttagctgacacacaaaatacctatccaggcagtgtaagatctggcaagtgtcagcaaggcctgggcagaggaacatgcTCCGTATTTTCAACCAGAACTATCAGGAAGCACCCCCgatcacatttttgtaaaacacatttacagtgttagtttcatcagctgttgtacaatatgaaatacaattattttgacTTCACAGGGCCTTTAAATGTAGGCAAACAAGTTTTCAGCATTCAAACTAATCTACCCAGccagattcagcaccatggacagtgaagATCAGAATACCTGCGATCTGACGATTAGAACAACAGTGCTATTTTTttttcactctgtccagtttgaaatatagttgaatagtgaagaccagagtctatcaaacttgggctgtctcttgt
>TU2367315
ctcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccATTCATGATGGGAAACAAGAAGGATTCCAATAAGAAATCCCGCCATTCTGAATCCAAAGACCAGACTACTGCTGAAGATATCATGTTGGCACATCCTGCCACATTTGGACTCCCAGAgggtcttccctccacctctcaacaggagaagcctcgcaaacgtccccttctaatcaggatgttttccaccatctccataggcctatccaagcc

Function

NR:

description
uncharacterized protein LOC110507890

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965072.1 False 4129 mRNA 0.42 4 27866010 27871529
TU2367315 True 418 TUCP 0.48 3 27869224 27870095

Neighbor

gene id symbol gene type direction distance location
LOC118944652 LOC106581256 coding downstream 5842 27856529 ~ 27860168 (-)
LOC118944703 LOC106581256 coding downstream 10695 27851333 ~ 27855315 (-)
LOC118944651 LOC106581256 coding downstream 21586 27839565 ~ 27844424 (-)
LOC118944702 LOC106581256 coding downstream 26984 27837161 ~ 27839026 (-)
LOC118944706 NA coding downstream 42249 27816137 ~ 27823761 (-)
LOC118944653 LOC106581256 coding upstream 1411 27872709 ~ 27889358 (-)
LOC118944700 LOC106581256 coding upstream 11884 27883413 ~ 27886802 (-)
LOC118944711 NA coding upstream 19048 27890577 ~ 27891337 (-)
LOC110507895 LOC106581259 coding upstream 92252 27963781 ~ 27967676 (-)
LOC110507894 LOC106581257 coding upstream 100557 27972086 ~ 27975216 (-)
G2070353 NA non-coding downstream 32515 27832835 ~ 27833495 (-)
G2070342 NA non-coding downstream 62356 27753068 ~ 27803654 (-)
G2070346 NA non-coding downstream 72531 27770159 ~ 27793479 (-)
G2070343 NA non-coding downstream 76967 27755443 ~ 27789043 (-)
G2070339 NA non-coding downstream 121755 27743988 ~ 27744255 (-)
G2070374 NA non-coding upstream 28528 27900057 ~ 27900680 (-)
G2070420 LOC107387520 non-coding upstream 122925 27994454 ~ 27994718 (-)
G2070424 NA non-coding upstream 125702 27997231 ~ 27997702 (-)
G2070425 NA non-coding upstream 126717 27998246 ~ 27998476 (-)
G2069842 NA other downstream 325401 27540000 ~ 27540609 (-)
LOC110507887 LOC106581252 other downstream 405362 27448217 ~ 27500051 (-)
LOC110507886 LOC106581251 other downstream 418512 27428483 ~ 27447544 (-)
LOC110507885 LOC106581250 other downstream 461632 27333102 ~ 27404380 (-)
G2068676 NA other downstream 1540531 26325130 ~ 26325479 (-)
G2070530 NA other upstream 299309 28170838 ~ 28172542 (-)
G2070744 NA other upstream 652417 28523946 ~ 28524550 (-)
G2071247 LOC106581281 other upstream 1069825 28941354 ~ 28942728 (-)
zgc:165508 LOC106613118 other upstream 1760383 29626155 ~ 29651489 (-)

Expression


Co-expression Network