LOC118944700 (LOC106581256)


Basic Information

Item Value
gene id LOC118944700
gene name LOC106581256
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 27883413 ~ 27886802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965074.1
caaagcagagggtcatctccaaccggaactgtaactgatataggcagtctactgagtggtaagtcctaccctctgccatctttctccgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGCCAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGACAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtggtgagacttctgtcaaaaatccaaacccaaactgatctgtacccaactgacgtcacacgcacgtcacaagacctgattccaaaagttatagctgccttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccATTCATGATGGGAAACAAGAAGGATTCCAATAAGAATTCCCGCCATTCTGAATCCAAAGACCAGACTACTGCTGAAGATATCATGTTGGCACATCCTGCCACATTTGGACTCCCAGAgggtcttccctccacctctcaacaGGAGAAGCCTCGCAAACGTCCCCTTCTAATCAGGATGTTTTCCACCATCTCCATAGGCCTATCCAAGCCATTCAAACGGTTTTCAAACTTTTACCTTCGACATCAACAAGCGACGCACGGGCTGGTCCTGCAGACTCCCACGCCCATGGcccaggagaaggctgggggCCACCTGCTCACTCACGTCCCAGCCATCTCCTTTGAGACCGACTCTACTGTGGAGTGCACCTCCAAGAGGACTCCGGAAGAGAGGGACCGGGTGAAGGTTAAACTGGCCAACATGGCCTTGATGGGAAGGATCAAAAGTCTTGGCTGTGAAATGCCCATTATGTGTGATTATCGAATTGATCATTTTCCACTTTTGAAACAACAATGGGAAAGACAGGGTTTATAGCAAAGGTTGCTCAGATTGGGCTTTTGGAAAAATTGGGAGAATGAAAGTGCACTCCTGATTCAGAGAGAAAGATCCAGCTTAATCATCCATACCATTgtttaaattacaataaaaaaacattcaaactgttcctgagttttgaaagacagagaaaggaaaacatCATTATCTTCAGTCTGTTCACACAAGTCCTACTGTCCACAATCTCAGGGTTCTTCAATACAAACACACCTGTTTCAGAAAACCTGATCACTTTCACATTCGAACAATGTTTGTAGGATACTTTTCAATAACTCAATAAATGTAAGTGTTGAAACCATACATAGCTGGTAACTTGAGCTCGGCAGAGTAGTTTTGACCTGTGTCCAGATGCAGTCATTTATGTTGTCTAAAGACAATTTGTCTCTTAtaacaatgttatttttctgaataatctaatttaattgactggtaggtagtcactaactatttgtagcatgtgttcctctgtttattgatatttacatggtgtgtatgtgttaagatgttaagtaattaatgttgatattatccaaagggtttttaactgaaatgttaaatgtatttaaaaaatggcAGAATCAAACAGTATTGGAATAGTGACTTGTATTTTGCATCTAGAAGTGTAAGAATTTTAGAAGAATGCTATTTCATCAGTCAAATGTTGCACTGTTTGATAAGACAGGGTAAAGAAAACCTCAATTTTAATTAGTTTAGTTGTGAG
>XM_036965075.1
caaagcagagggtcatctccaaccggaactgtaactgatataggcagtctactgagtggtaagtcctaccctctgccatctttctccgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGCCAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGACAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtggtgagacttctgtcaaaaatccaaacccaaactgatctgtacccaactgacgtcacacgcacgtcacaagacctgattccaaaagttatagctgccttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccATTCATGATGGGAAACAAGAAGGATTCCAATAAGAATTCCCGCCATTCTGAATCCAAAGACCAGACTACTGCTGAAGATATCATGTTGGCACATCCTGCCACATTTGGACTCCCAGAgggtcttccctccacctctcaacaGGAGAAGCCTCGCAAACGTCCCCTTCTAATCAGGATGTTTTCCACCATCTCCATAGGCCTATCCAAGCCATTCAAACGCTTTTACCTTCGACATCAACAAGCGACGCACGGGCTGGTCCTGCAGACTCCCACGCCCATGGcccaggagaaggctgggggCCACCTGCTCACTCACGTCCCAGCCATCTCCTTTGAGACCGACTCTACTGTGGAGTGCACCTCCAAGAGGACTCCGGAAGAGAGGGACCGGGTGAAGGTTAAACTGGCCAACATGGCCTTGATGGGAAGGATCAAAAGTCTTGGCTGTGAAATGCCCATTATGTGTGATTATCGAATTGATCATTTTCCACTTTTGAAACAACAATGGGAAAGACAGGGTTTATAGCAAAGGTTGCTCAGATTGGGCTTTTGGAAAAATTGGGAGAATGAAAGTGCACTCCTGATTCAGAGAGAAAGATCCAGCTTAATCATCCATACCATTgtttaaattacaataaaaaaacattcaaactgttcctgagttttgaaagacagagaaaggaaaacatCATTATCTTCAGTCTGTTCACACAAGTCCTACTGTCCACAATCTCAGGGTTCTTCAATACAAACACACCTGTTTCAGAAAACCTGATCACTTTCACATTCGAACAATGTTTGTAGGATACTTTTCAATAACTCAATAAATGTAAGTGTTGAAACCATACATAGCTGGTAACTTGAGCTCGGCAGAGTAGTTTTGACCTGTGTCCAGATGCAGTCATTTATGTTGTCTAAAGACAATTTGTCTCTTAtaacaatgttatttttctgaataatctaatttaattgactggtaggtagtcactaactatttgtagcatgtgttcctctgtttattgatatttacatggtgtgtatgtgttaagatgttaagtaattaatgttgatattatccaaagggtttttaactgaaatgttaaatgtatttaaaaaatggcAGAATCAAACAGTATTGGAATAGTGACTTGTATTTTGCATCTAGAAGTGTAAGAATTTTAGAAGAATGCTATTTCATCAGTCAAATGTTGCACTGTTTGATAAGACAGGGTAAAGAAAACCTCAATTTTAATTAGTTTAGTTGTGAG
>TU2367324
gcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccATTCATGATGGGAAACAAGAAGGATTCCAATAAGAATTCCCGCCATTCTGAATCCAAAGACCAGACTACTGCTGAAGATATCATGTTGGCACATCCTGCCACATTTGGACTCC

Function

NR:

description
uncharacterized protein LOC110507890

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965074.1 False 2023 mRNA 0.43 4 27883413 27886802
XM_036965075.1 False 2014 mRNA 0.43 4 27883413 27886802
TU2367324 True 387 lncRNA 0.47 3 27885492 27886330

Neighbor

gene id symbol gene type direction distance location
LOC118944653 LOC106581256 coding downstream 7169 27872709 ~ 27889358 (-)
LOC118944698 LOC106581256 coding downstream 11884 27866010 ~ 27871529 (-)
LOC118944652 LOC106581256 coding downstream 23245 27856529 ~ 27860168 (-)
LOC118944703 LOC106581256 coding downstream 28098 27851333 ~ 27855315 (-)
LOC118944651 LOC106581256 coding downstream 38989 27839565 ~ 27844424 (-)
LOC118944711 NA coding upstream 3775 27890577 ~ 27891337 (-)
LOC110507895 LOC106581259 coding upstream 76979 27963781 ~ 27967676 (-)
LOC110507894 LOC106581257 coding upstream 85284 27972086 ~ 27975216 (-)
LOC110507896 LOC106581262 coding upstream 96284 27983086 ~ 27994009 (-)
LOC110507901 LOC106581268 coding upstream 599571 28486373 ~ 28491070 (-)
G2070353 NA non-coding downstream 49918 27832835 ~ 27833495 (-)
G2070342 NA non-coding downstream 79759 27753068 ~ 27803654 (-)
G2070346 NA non-coding downstream 89934 27770159 ~ 27793479 (-)
G2070343 NA non-coding downstream 94370 27755443 ~ 27789043 (-)
G2070339 NA non-coding downstream 139158 27743988 ~ 27744255 (-)
G2070374 NA non-coding upstream 13255 27900057 ~ 27900680 (-)
G2070420 LOC107387520 non-coding upstream 107652 27994454 ~ 27994718 (-)
G2070424 NA non-coding upstream 110429 27997231 ~ 27997702 (-)
G2070425 NA non-coding upstream 111444 27998246 ~ 27998476 (-)
G2070427 NA non-coding upstream 113630 28000432 ~ 28000649 (-)
G2069842 NA other downstream 342804 27540000 ~ 27540609 (-)
LOC110507887 LOC106581252 other downstream 422765 27448217 ~ 27500051 (-)
LOC110507886 LOC106581251 other downstream 435915 27428483 ~ 27447544 (-)
LOC110507885 LOC106581250 other downstream 479035 27333102 ~ 27404380 (-)
G2070530 NA other upstream 284036 28170838 ~ 28172542 (-)
G2070744 NA other upstream 637144 28523946 ~ 28524550 (-)
G2071247 LOC106581281 other upstream 1054552 28941354 ~ 28942728 (-)
zgc:165508 LOC106613118 other upstream 1745110 29626155 ~ 29651489 (-)
G2072288 LOC100196662 other upstream 1943300 29822517 ~ 29833885 (-)

Expression


Co-expression Network