LOC110507896 (LOC106581262)


Basic Information

Item Value
gene id LOC110507896
gene name LOC106581262
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 27983086 ~ 27994009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964938.1
CTGACAAACACACACGACAGACCGCTCCTTATCATCTTCCTAGTCCAGTTAACCTTGtcactctcgctctttctctcacacagaAGCGCTCTAAGGCTGTGCCCTTGTCCAGaacaaaagaaaaaaagaaaacggCACCCTGCAATAACTCTGCGGACCCCAAGCAAATAGAAACTGAAGAATGGAAGGCTCCCgaatctctctccatcttctcttcttCCTTCTGATTGGACAAGCTTCACACACCAGCATTACTCAGCCTCAGACCACTAATGCCATATATCCAACTGACATAACCTCAATTACCCAAGAGGAAAACGACACCTCCAGCTCTCCCACAAAGGCCACCACGGGCTGCCTCATCAAGCCCCAGTTGGGCTTCATAGTGGTGACCTGCGCCGGGGGCCTGGTCCTGTTTCTGCTCGTCTCTACTGTGGTCCTGGCCTCCCAGGTGTGCAGTCTTAGGCGCCAGGCCCGTGCCCCTCGCCCCGCCCGCAGTAACGTGGACCTGGTGAGTGGCGCGGGCTACTGGGACACGGAGCACTCTGAGGGGGGCATAGTGGGGCCCTGTGATACCAGTGTCATGTTGGAGGAGGTCCGTTTGGATGGAGAAGAGGATGAAGAGCAGggggaagaagagaaggaagaaagggaggaggagcaggCAGAAGGGGTCAGAGGCCAAACAGAGGATGCGAGAACAACTGGCGAAATAGCCATGCAGATGCAGAGTTCCAGCTCCAGGGATTTGTGTCTGGAAATCCCCCAGGATCTAGAGAACATGCCCCTAGTGGTGTGAGTAGAGCATTGCATGCACTCCCTCTCCAGCCTCAGAGAGCCATGGCCTGGCTCAGAGCTGAACTTCACTCAGGCATAGATATCAACAGGCCAGATCAGCTCCAGTCTTGTGTCTCAAGTCAAAACAAAgagtatttgttatttttttttaagtactcCAGCtttatgtaatcaattttaggagCTTTTACATATTTGCTTTGTAAACTGCATTAATCTGATTTGGAATGATTTTGTCTCAAATTTATTTCTATAGAGAACATTTGAATAGGCTGTTGGGAGCAGCAAGACATTAATTTGAAATAATGTGCTACGAACAGCACACTACTGCCAACTGCCCAAGTTAATTACGCTTACAGCTTACTACGAAGGTTCAGGATCTttgtacggggggggggggggggggggggtcacttatattttacatttgagatatttagcagacgctcttatccagagtaactTGCAGGAGCAACTAGGAtaaagtaccttgctcaagggcatattgacaaattaaaaacagtgacctttcggttactggcccaaagctcttaactGCCAAATTCAATCATATTAGCAGTACACTATGCCAACTTGTCTTAATGGCAGAGGTACTGAGAATATTTGATTAACTAAGTGTAACAAAAGGGTATTAAGCTTACGTAGAAAGTATATTTTGTTGAAGATTGAAATGATAGAAACTCAACTCCAATATGTAATAGAatggaagccccccccccccccccccccatctctattGACACTGTTGGCTAAAAGATTCCTTCTCAGCAAACAAGCACTCAAACATTGTCTACCATATATATAACTGAATGTGGTCGCTTCTCCCCAAGACATTAAATGTCAAACATTTTATAATATATGTTGTCCAATCTAAACTGtctgtattaaaaaaatataataataaaacacTCAAATATGCCAACATGCTTGCTGGTCAGATGTGAGTTCAGTTAAAATGATTACTTTCCACCAACTTGATGTGAACTTCTATTCCTTCATCTGAAGTGATTCCATGCACAAATACTATACCATGGGTAAACTTTGAACATCTTGTTGCCATCGGTGGCTGGGCACAGAGATAGCATTGGGCCTGCCAAGCCTACATCAATAAGTCTTCCCCTCAACCTTCACGTGTCAGTCGAGCAGTCACAGAACTCCTAACTCATTTGTTTCCACTCCTCTCTACTAAGTCTAACTTCTTTTCTCTTTTCtgtaaaaatacaatatttgtttAAATGCCACAACCCAAATAAATGGAGGTTTTGTGAA
>XM_036964939.1
CTGACAAACACACACGACAGACCGCTCCTTATCATCTTCCTAGTCCAGTTAACCTTGtcactctcgctctttctctcacacagaAGCGCTCTAAGGCTGTGCCCTTGTCCAGAGAAACTGAAGAATGGAAGGCTCCCgaatctctctccatcttctcttcttCCTTCTGATTGGACAAGCTTCACACACCAGCATTACTCAGCCTCAGACCACTAATGCCATATATCCAACTGACATAACCTCAATTACCCAAGAGGAAAACGACACCTCCAGCTCTCCCACAAAGGCCACCACGGGCTGCCTCATCAAGCCCCAGTTGGGCTTCATAGTGGTGACCTGCGCCGGGGGCCTGGTCCTGTTTCTGCTCGTCTCTACTGTGGTCCTGGCCTCCCAGGTGTGCAGTCTTAGGCGCCAGGCCCGTGCCCCTCGCCCCGCCCGCAGTAACGTGGACCTGGTGAGTGGCGCGGGCTACTGGGACACGGAGCACTCTGAGGGGGGCATAGTGGGGCCCTGTGATACCAGTGTCATGTTGGAGGAGGTCCGTTTGGATGGAGAAGAGGATGAAGAGCAGggggaagaagagaaggaagaaagggaggaggagcaggCAGAAGGGGTCAGAGGCCAAACAGAGGATGCGAGAACAACTGGCGAAATAGCCATGCAGATGCAGAGTTCCAGCTCCAGGGATTTGTGTCTGGAAATCCCCCAGGATCTAGAGAACATGCCCCTAGTGGTGTGAGTAGAGCATTGCATGCACTCCCTCTCCAGCCTCAGAGAGCCATGGCCTGGCTCAGAGCTGAACTTCACTCAGGCATAGATATCAACAGGCCAGATCAGCTCCAGTCTTGTGTCTCAAGTCAAAACAAAgagtatttgttatttttttttaagtactcCAGCtttatgtaatcaattttaggagCTTTTACATATTTGCTTTGTAAACTGCATTAATCTGATTTGGAATGATTTTGTCTCAAATTTATTTCTATAGAGAACATTTGAATAGGCTGTTGGGAGCAGCAAGACATTAATTTGAAATAATGTGCTACGAACAGCACACTACTGCCAACTGCCCAAGTTAATTACGCTTACAGCTTACTACGAAGGTTCAGGATCTttgtacggggggggggggggggggggggtcacttatattttacatttgagatatttagcagacgctcttatccagagtaactTGCAGGAGCAACTAGGAtaaagtaccttgctcaagggcatattgacaaattaaaaacagtgacctttcggttactggcccaaagctcttaactGCCAAATTCAATCATATTAGCAGTACACTATGCCAACTTGTCTTAATGGCAGAGGTACTGAGAATATTTGATTAACTAAGTGTAACAAAAGGGTATTAAGCTTACGTAGAAAGTATATTTTGTTGAAGATTGAAATGATAGAAACTCAACTCCAATATGTAATAGAatggaagccccccccccccccccccccatctctattGACACTGTTGGCTAAAAGATTCCTTCTCAGCAAACAAGCACTCAAACATTGTCTACCATATATATAACTGAATGTGGTCGCTTCTCCCCAAGACATTAAATGTCAAACATTTTATAATATATGTTGTCCAATCTAAACTGtctgtattaaaaaaatataataataaaacacTCAAATATGCCAACATGCTTGCTGGTCAGATGTGAGTTCAGTTAAAATGATTACTTTCCACCAACTTGATGTGAACTTCTATTCCTTCATCTGAAGTGATTCCATGCACAAATACTATACCATGGGTAAACTTTGAACATCTTGTTGCCATCGGTGGCTGGGCACAGAGATAGCATTGGGCCTGCCAAGCCTACATCAATAAGTCTTCCCCTCAACCTTCACGTGTCAGTCGAGCAGTCACAGAACTCCTAACTCATTTGTTTCCACTCCTCTCTACTAAGTCTAACTTCTTTTCTCTTTTCtgtaaaaatacaatatttgtttAAATGCCACAACCCAAATAAATGGAGGTTTTGTGAA
>XM_021588299.2
GAACACACAAAGCCTACAAATTACAAATCAAATGTGAAGCTTAAAGTCATTGATTAGTCACTTAAATAGATGTAAATGACTAAGATGGGTGCTGTGATACTTCAACTAAAAGAGCACTGTGTTTACGGTTCCTTAGCAAAACATCTTCACAATGATCACCATTCACTGCCATGCTTTACAGTGTCTGCCTTAATAGGAGCGAGGGCCTGGCTTACTATTGTCTGCCTGGGCTCTGAGGGTTTGTGTGTTTCTATCTCAGTAAGAGGGACAATTGGGATAAACAGCTCACAGATGGACATTGAGTTGATGATTCGGTCAGTTTGGATTATGTAAGTGGAGAGAAGTCGTAACTAAACTAAATTGCATATGAGACATCTGTATGCTGTAGCGGTGGAGGTCCAAGGAGCCTAGAAATAACTAAGTCAGAAAAAGACCCGAGGGGGGATAGGAAGTGTGTGCATCTCAAGAGGCTGGGTCGCAGCAGaAGCGCTCTAAGGCTGTGCCCTTGTCCAGAGAAACTGAAGAATGGAAGGCTCCCgaatctctctccatcttctcttcttCCTTCTGATTGGACAAGCTTCACACACCAGCATTACTCAGCCTCAGACCACTAATGCCATATATCCAACTGACATAACCTCAATTACCCAAGAGGAAAACGACACCTCCAGCTCTCCCACAAAGGCCACCACGGGCTGCCTCATCAAGCCCCAGTTGGGCTTCATAGTGGTGACCTGCGCCGGGGGCCTGGTCCTGTTTCTGCTCGTCTCTACTGTGGTCCTGGCCTCCCAGGTGTGCAGTCTTAGGCGCCAGGCCCGTGCCCCTCGCCCCGCCCGCAGTAACGTGGACCTGGTGAGTGGCGCGGGCTACTGGGACACGGAGCACTCTGAGGGGGGCATAGTGGGGCCCTGTGATACCAGTGTCATGTTGGAGGAGGTCCGTTTGGATGGAGAAGAGGATGAAGAGCAGggggaagaagagaaggaagaaagggaggaggagcaggCAGAAGGGGTCAGAGGCCAAACAGAGGATGCGAGAACAACTGGCGAAATAGCCATGCAGATGCAGAGTTCCAGCTCCAGGGATTTGTGTCTGGAAATCCCCCAGGATCTAGAGAACATGCCCCTAGTGGTGTGAGTAGAGCATTGCATGCACTCCCTCTCCAGCCTCAGAGAGCCATGGCCTGGCTCAGAGCTGAACTTCACTCAGGCATAGATATCAACAGGCCAGATCAGCTCCAGTCTTGTGTCTCAAGTCAAAACAAAgagtatttgttatttttttttaagtactcCAGCtttatgtaatcaattttaggagCTTTTACATATTTGCTTTGTAAACTGCATTAATCTGATTTGGAATGATTTTGTCTCAAATTTATTTCTATAGAGAACATTTGAATAGGCTGTTGGGAGCAGCAAGACATTAATTTGAAATAATGTGCTACGAACAGCACACTACTGCCAACTGCCCAAGTTAATTACGCTTACAGCTTACTACGAAGGTTCAGGATCTttgtacggggggggggggggggggggggtcacttatattttacatttgagatatttagcagacgctcttatccagagtaactTGCAGGAGCAACTAGGAtaaagtaccttgctcaagggcatattgacaaattaaaaacagtgacctttcggttactggcccaaagctcttaactGCCAAATTCAATCATATTAGCAGTACACTATGCCAACTTGTCTTAATGGCAGAGGTACTGAGAATATTTGATTAACTAAGTGTAACAAAAGGGTATTAAGCTTACGTAGAAAGTATATTTTGTTGAAGATTGAAATGATAGAAACTCAACTCCAATATGTAATAGAatggaagccccccccccccccccccccatctctattGACACTGTTGGCTAAAAGATTCCTTCTCAGCAAACAAGCACTCAAACATTGTCTACCATATATATAACTGAATGTGGTCGCTTCTCCCCAAGACATTAAATGTCAAACATTTTATAATATATGTTGTCCAATCTAAACTGtctgtattaaaaaaatataataataaaacacTCAAATATGCCAACATGCTTGCTGGTCAGATGTGAGTTCAGTTAAAATGATTACTTTCCACCAACTTGATGTGAACTTCTATTCCTTCATCTGAAGTGATTCCATGCACAAATACTATACCATGGGTAAACTTTGAACATCTTGTTGCCATCGGTGGCTGGGCACAGAGATAGCATTGGGCCTGCCAAGCCTACATCAATAAGTCTTCCCCTCAACCTTCACGTGTCAGTCGAGCAGTCACAGAACTCCTAACTCATTTGTTTCCACTCCTCTCTACTAAGTCTAACTTCTTTTCTCTTTTCtgtaaaaatacaatatttgtttAAATGCCACAACCCAAATAAATGGAGGTTTTGTGAA
>XR_005039981.1
GAACACACAAAGCCTACAAATTACAAATCAAATGTGAAGCTTAAAGTCATTGATTAGTCACTTAAATAGATGTAAATGACTAAGATGGGTGCTGTGATACTTCAACTAAAAGAGCACTGTGTTTACGGTTCCTTAGCAAAACATCTTCACAATGATCACCATTCACTGCCATGCTTTACAGTGTCTGCCTTAATAGGAGCGAGGGCCTGGCTTACTATTGTCTGCCTGGGCTCTGAGGGTTTGTGTGTTTCTATCTCAGTAAGAGGGACAATTGGGATAAACAGCTCACAGATGGACATTGAGTTGATGATTCGGTCAGTTTGGATTATGTAAGTGGAGAGAAGTCGTAACTAAACTAAATTGCATATGAGACATCTGTATGCTGTAGCGGTGGAGGTCCAAGGAGCCTAGAAATAACTAAGTCAGAAAAAGACCCGAGGGGGGATAGGAAGTGTGTGCATCTCAAGAGGCTGGGTCGCAGCAGaAGCGCTCTAAGGCTGTGCCCTTGTCCAGaacaaaagaaaaaaagaaaacggCACCCTGCAATAACTCTGCGGACCCCAAGCAAATAGAAACTGAAGAATGGAAGGCTCCCgaatctctctccatcttctcttcttCCTTCTGATTGGACAAGCTTCACACACCAGCATTACTCAGCCTCAGACCACTAATGCCATATATCCAACTGACATAACCTCAATTACCCAAGAGGAAAACGACACCTCCAGCTCTCCCACAAAGGCCACCACGGGCTGCCTCATCAAGCCCCAGTTGGGCTTCATAGTGGTGACCTGCGCCGGGGGCCTGGTCCTGTTTCTGCTCGTCTCTACTGTGGTCCTGGCCTCCCAGGTGTGCAGTCTTAGGCGCCAGGCCCGTGCCCCTCGCCCCGCCCGCAGTAACGTGGACCTGGTGAGTGGCGCGGGCTACTGGGACACGGAGCACTCTGAGGGGGGCATAGTGGGGCCCTGTGATACCAGTGTCATGTTGGAGGAGGTCCGTTTGGATGGAGAAGAGGATGAAGAGCAGggggaagaagagaaggaagaaagggaggaggagcaggCAGAAGGGGTCAGAGGCCAAACAGAGGATGCGAGAACAACTGGCGAAATAGCCATGCAGATGCAGAGTTCCAGCTCCAGGGATTTGTGTCTGGAAATCCCCCAGGATCTAGAGAACATGCCCCTAGTGGTGTGAGTAGAGCATTGCATGCACTCCCTCTCCAGCCTCAGAGAGCCATGGCCTGGCTCAGAGCTGAACTTCACTCAGGCATAGATATCAACAGGCCAGATCAGCTCCAGTCTTGTGTCTCAAGTCAAAACAAAgagtatttgttatttttttttaagtactcCAGCtttatgtaatcaattttaggagCTTTTACATATTTGCTTTGTAAACTGCATTAATCTGATTTGGAATGATTTTGTCTCAAATTTATTTCTATAGAGAACATTTGAATAGGCTGTTGGGAGCAGCAAGACATTAATTTGAAATAATGTGCTACGAACAGCACACTACTGCCAACTGCCCAAGTTAATTACGCTTACAGCTTACTACGAAGGTTCAGGATCTttgtacggggggggggggggggggggggtcacttatattttacatttgagatatttagcagacgctcttatccagagtaactTGCAGGAGCAACTAGGAtaaagtaccttgctcaagggcatattgacaaattaaaaacagtgacctttcggttactggcccaaagctcttaactGCCAAATTCAATCATATTAGCAGTACACTATGCCAACTTGTCTTAATGGCAGAGGTACTGAGAATATTTGATTAACTAAGTGTAACAAAAGGGTATTAAGCTTACGTAGAAAGTATATTTTGTTGAAGATTGAAATGATAGAAACTCAACTCCAATATGTAATAGAatggaagccccccccccccccccccccatctctattGACACTGTTGGCTAAAAGATTCCTTCTCAGCAAACAAGCACTCAAACATTGTCTACCATATATATAACTGAATGTGGTCGCTTCTCCCCAAGACATTAAATGTCAAACATTTTATAATATATGTTGTCCAATCTAAACTGtctgtattaaaaaaatataataataaaacacTCAAATATGCCAACATGCTTGCTGGTCAGATGTGAGTTCAGTTAAAATGATTACTTTCCACCAACTTGATGTGAACTTCTATTCCTTCATCTGAAGTGATTCCATGCACAAATACTATACCATGGGTAAACTTTGAACATCTTGTTGCCATCGGTGGCTGGGCACAGAGATAGCATTGGGCCTGCCAAGCCTACATCAATAAGTCTTCCCCTCAACCTTCACGTGTCAGTCGAGCAGTCACAGAACTCCTAACTCATTTGTTTCCACTCCTCTCTACTAAGTCTAACTTCTTTTCTCTTTTCtgtaaaaatacaatatttgtttAAATGCCACAACCCAAATAAATGGAGGTTTTGTGAA

Function

NR:

description
uncharacterized protein LOC110507896

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964938.1 False 2088 mRNA 0.45 3 27983086 27986031
XM_036964939.1 False 2031 mRNA 0.45 2 27983086 27986031
XM_021588299.2 False 2432 mRNA 0.44 4 27983086 27994009
XR_005039981.1 True 2489 mRNA 0.44 5 27983086 27994009

Neighbor

gene id symbol gene type direction distance location
LOC110507894 LOC106581257 coding downstream 7870 27972086 ~ 27975216 (-)
LOC110507895 LOC106581259 coding downstream 15410 27963781 ~ 27967676 (-)
LOC118944711 NA coding downstream 91749 27890577 ~ 27891337 (-)
LOC118944700 LOC106581256 coding downstream 96284 27883413 ~ 27886802 (-)
LOC118944653 LOC106581256 coding downstream 106842 27872709 ~ 27889358 (-)
LOC110507901 LOC106581268 coding upstream 492364 28486373 ~ 28491070 (-)
LOC110507147 nos2 coding upstream 497576 28491585 ~ 28513616 (-)
LOC110507903 LOC106581270 coding upstream 568975 28562984 ~ 28655618 (-)
LOC110507905 LOC106581273 coding upstream 685358 28679367 ~ 28682617 (-)
hsp47 hsp47 coding upstream 749283 28743292 ~ 28748005 (-)
G2070354 NA non-coding downstream 61245 27833893 ~ 27921841 (-)
G2070374 NA non-coding downstream 82406 27900057 ~ 27900680 (-)
G2070353 NA non-coding downstream 149591 27832835 ~ 27833495 (-)
G2070342 NA non-coding downstream 179432 27753068 ~ 27803654 (-)
G2070420 LOC107387520 non-coding upstream 445 27994454 ~ 27994718 (-)
G2070424 NA non-coding upstream 3222 27997231 ~ 27997702 (-)
G2070425 NA non-coding upstream 4237 27998246 ~ 27998476 (-)
G2070427 NA non-coding upstream 6423 28000432 ~ 28000649 (-)
G2070429 NA non-coding upstream 7530 28001539 ~ 28002359 (-)
LOC118944698 LOC106581256 other downstream 112991 27866010 ~ 27871529 (-)
G2069842 NA other downstream 442477 27540000 ~ 27540609 (-)
LOC110507887 LOC106581252 other downstream 522438 27448217 ~ 27500051 (-)
LOC110507886 LOC106581251 other downstream 535588 27428483 ~ 27447544 (-)
G2070530 NA other upstream 176829 28170838 ~ 28172542 (-)
G2070744 NA other upstream 529937 28523946 ~ 28524550 (-)
G2071247 LOC106581281 other upstream 947345 28941354 ~ 28942728 (-)
zgc:165508 LOC106613118 other upstream 1637903 29626155 ~ 29651489 (-)
G2072288 LOC100196662 other upstream 1836093 29822517 ~ 29833885 (-)

Expression


Co-expression Network