LOC110507903 (LOC106581270)


Basic Information

Item Value
gene id LOC110507903
gene name LOC106581270
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 28562984 ~ 28655618 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964616.1
CACTGAGTGGTTGTGTTCTCTGGCTGTGCATGTTTCCTAGGTCCTGACAGCACCATCCGGCTGGAGGGAGTCGACACTGGCTGCTTGTTTTCTAAATACAAGGGACTTTTggatattttttgtttttattcataTTTTCCTTTAATGGATTTATGTGTGTACTGCGTAGGGAGATAGTGTGCGGAACAAGCTGAACACACGGGATCCAATGGGGaaaataagttgactgtgctgtCAGAAGAATTTGTTTTCCTCGTTATCCAGAAAAAAATATAGCTAATTTTATCAACATGATTCGGATTTCTGGAGTCTGGGGTTGCGGGAATTGTGACATCTGAGGGAGGACAACGGTCCTTGGGCTATTTCTACAAGACGTCGTAAACGGCAACATTGTATCACATCTCGGTAGCGTTCTCGCTTTGCTTGGGTCTATTTGTTCTTGCAGTCAGTCTACTGCTACATAATATTGGAATTGTTGTTATATGCGGAACATTTGAAGTCTCCCATACTGTTCTTGCAACGCCTACTACAAGTGGCTATCAAGCAAACAACGGTAGCTCGACCTAAAGCCGAATAACTTCTGCAAACTGCATGCAGCACAGGCGGTGGGAACAACGGCGGTGCTGGACCAGACAATATGGCAAACTTGAGTAATGAAAGATGAATGCTGTGCTATTTCCCATGTGATACATATCGGTTTCCCTTTTAATATCAAGAAGGGGAAATTGACCGAGTTTCGCCAGTGGAGAGGGGAACGCCACTTCCAACATGAGGGAGACCTAGGGCCGTGGATAATTTATTTATTGTGGGGGGTGCGGGTTATTTTCTGTcgcattttttatttaaaaattgaAACAAAATATACTTAATTTACATTTTAATTATTGCAATAGTTTAGTGGCCTATCTGCTATCGGTGCATGCGGAAGAAAATGTAATTACGAGAAGTAGGTCAGATCCGTGTAATGATAAAGCTTTCAGGGAGAGTGAGGTTGATCTCAGAATTATAGCTGACATGTTTATTTAATTCAAACCTTTTCAAGTTGGTTTTGTTGATTGTATGCATCGGGTCACAACCAATGACCAGTTAAACACCATCTGCCCAATCCTATAGCCTACCTTCACCTGGGATATTATTTTCGCGTAAAATAAAAGGCGCATTTTCACCTATATCCCTCCTTTCCTTTCTTTTTTATTGTTATTGAGTGAATGGCTTTGTGCGGAACAACGGCTGCCAATGCCGCAAAAATGATGGCTGCATACAACGGTGGCGCCTCGGCAGTTGCTGCCCATCACCCGCACCATCACCACCAACTACCGCATCTCCCACCTCCCCatctccaccaccatcaccacccggGCCAGCATCACTTGCAACACCCCGGCTCTGCCGCCGCTGTccaccctgtacaacaacacgcTTCTACAGCAGCAGCTGCAGCGGCAGCCGCGGTAATGCTGAACCCGAGCCAGCAACAACCATACTTTCCCTCGCCAGCTCCTGGACAAGCCCCCGGCCCGGCAGCGGCAGCGGCACCTGCCCAAGTTCAAGCTGCGGCTGTCAAagctcaccaccaccatcatcaacacTCGCACCACTTACAGCCGCAGTTGGACATAGAGCCCGACAGACCCATCGGCTATGGAGCTTTTGGGGTGGTCTGGTCAGTGACGGACCCCCGGGATGGAAAGCGCGTCGCCCTCAAAAAGATGCCCAACGTCTTCCAGAACCTCGTCTCCTGTAAGAGGGTCTTCCGCGAGCTGAAGATGCTGTGCTTCTTCAAACATGATAATgtGCTCTCGGCTCTCGACATCCTACAGCCTCCACACATCGACTACTTTGAGGAAATCTATGTGGTGACAGAACTGATGCAGAGTGACCTCCATAAGATCATCGTGTCACCTCAGCCCCTCAGCTCAGACCACGTCAAAGTGTTTCTCTATCAGATCCTCCGAGGACTGAAGTACCTGCACTCAGCTGGCATCCTACATCGAGACATCAAACCTGGCAACCTCCTGGTCAACAGCAACTGTGTGCTTAAGATCTGTGACTTTGGGCTGGCGCGGTTGGAGGAGCTGGACGAGTCTCGTCACATGACTCAGGAGGTGGTGACACAGTATTACCGTGCGCCAGAAATCCTAATGGGCAGCCACCATTACTCCAACGCCATCGACATCTGGTCTGTAGGATGCATCTTTGCCGAGCTACTGGGCCGACGCATCCTGTTCCAGGCACAAAGTCCCATCCAGCAGCTGGATCTGATCACGGACCTGCTGGGCACTCCCTCTCTGGAGGCCATGAGGACGGCGTGTGAGGGGGCCAGGGCCCACATCCTCAGAGGACCACACAAACAGCCATCTCTTCCTGTCCTGTACACCCTGTCCAGCCAGGCCACCCACGAAGCTGTCCACCTCCTGTGCAGGATGCTTGTGTTCGATCcgTCGAAGCGGATTTCAGCGAAGGATGCCCTGGCCCATCCCTACCTGGACGAGGGCAGACTGAGGTACCACACCTGTATGTGTAAGTGCTGCTACACCACCTCCTCTGGTCGCGTCTACACCAGCGACTTCGAGCCCGTCACCACACCCAAGTTCGACGATGGCTTTGAGAAGAATCTGACCTCCGTCAGACAGGTCAAAGAGATCATTCACCAGTTCATCCTGGAGCAGCAGAAGGGGAACAGAGTGCCGCTCTGCATCAACCCCCAGTCGGCCGCTTTCAAAAGCTTTATCAGTTCCACTGTGGCCCAGCCCTCTGAGATGCCCCCGTCCCCCCTGGTGTGGGAATAGCTGCTGTCTGGGCCACGACCCTGCCCATGGCCCGCGCTGGACTACTGAGGACAAGAAGAAGAAACCCCCACCCTGCGTAGCATTTCACTGGATTCTAGGACTAGCAATGtccactgtgtgtgtactgtaataCTAACTATGAAGTTTTAAAATGAACCCAACCAACCACTGCTGACTGGGTTATGGAGGGACTTTTAGAGTGTGCTATGTATACAAGTGTATACCCACACTGTTCTGTAGATGCAAACCCACTAATGAATGCGCACACACATGTGCATACAAACATTGTGCAGAGGTGGTATAAGGGCCACCCTCGTGGGCTTGAAAGTGTGTGTAAAGCCAGGGATGAGACAGAGGTAGTATGCTACAGAGTCCTCGTAGTCTCTGCCTGCAGTCCCAGAGGGCAACGCACAGCTCCCATCCACTTCCATACATAGTCATCACTTATTTATTAAAGGAGGGAGACGGGGTCCGGTATGGGTGTTGTTTTTAAATATAGAACGAGATTTAAGACTGTACCTACTCACGCTAGCTAATCCCCCCGAGAAATCATAGCTTTCAATTAGAGATAaagctttttatttatttgtagtgTACTGTTAAACAGTATAGTCAGAGGGTTTCattgtctgtttttttgttacatttttttcTGCTCCATTGCTGTTTGTTCTATGCCTGCTGTCCCCCGGGTTAGAAGTCAGTATTTGTGAAGAGGTGTGCTCTGCATGCCACTTGGTTGCGATACATATGGCGAGAACCCCTCACACggcacacccactcacacacctAACCCAAATGTGGGCATGTGGAAGTATGGCACTGTGTCAGTATTAGCTGGGTAAAATGAGGTAACCCTGGAATGTGGTTGCTTCAAAGAATAGACTATTAGTGCGAAGAGCCACTGAGAACTGAAGTACTGTAGCATGACGGGGGACAGAGAGGCAGTAGTTTAGGGTACATATTAATATTGTGGTATTCTGCACAGGTTTTGTGCTACAGTAACAAGAAGGCCATGTTGGGGTGCTACTTGGTCGTTACATTTTCTCTCTGGAGACTCTGAGAGACCGAATTCAAGTAATCTGCTGTTAGACATACTGTACCATATGAACAGGCATATTAAGAGTATAAAGGATACAGACATTCACGGGTTCCCCTACCATGTCTGCTGAATCTATAGTCCTACCATACACTGTATATCCATGTTCTGTCAATACATACCTAGTTGAAGACAGACAAGCTAAATAATACGAAGATCAGCCAAACCAAAATAATGAAATGATTCTATAGAGAAAGCGAAACCAAGATTTAAAAAATAGATGTTTGATGATACGAGGGGATGTTGCCATTCCTTGAAGACATTCAATCATTTCCGTAGGGttccaacaagaggggtgtgtgCGTGTTGCTTATACGTGTGTCCTGTCACATGCGAATGAGAAAGTTTAACTAACTACAGTGAGTTGCTTTGGTGAGGGTTTGTCACCTTGACACCATTCCCTTGATAAATAGATATATTAGGTCTACTTTAAGCCTCACTCCCCAAAGCAATGTTTCATGTTAACCACACCTGTACCTACGCCAATAAAATAAACTCTCAGAAGAAAactatttaatatattttttgattattattttttagttTTCAATCAACATTCTATTGAATGCTTTCTCATGATTCACAGAATATGATAtgtaaatacataaaaaaacgaaTAGATTTAAAACTAAATCTACAAtggaggagaaaaaaaacaaagaaatgaAAACTCAAAACAATACTGCTGTATAGAAGGTGTATTAGCCTGCACATTTTTAGGGCtgtgcattttattttatttttgagacttgcatataaatgtatatattttatttggtCTTTCATTTGTTTTCCCCTGTACTAGAGTGTGTAGAAGACAAAAATAATCCAAAACAAAAATTATTcagaaaacaaatgaaaaaacacataacCAATTATGTTAATTGTGTCTTGTGTGTACTGCAGagctgtggatatattgaagtagaAGGCtttttcttcttattattattattatactactattattattattatattattatttcttTTACCTTAGAGAAACACTTTACTATTGTGTTTATATGTATATAAAGGAATCACAATGTTGGTCTCTACCTCTTGAGCTCAATTACTTAGTTTGTCTACCTCCACAAGTTTATCATTTCATGTGGAGAATTACAAATAAAACTTGAATGTCCCTTCCAGCTTTtatattgaaataaataaaaaacgcgCAAGTTTCTTCTTCACTCATTTGAAAAACTCTTTAAAATCTGCCAGAGGTGGGATCCATCCTATCATGTCATTGTATTAAAAGGCCCTATCAATAGCCAAGCAATTGCAGACTGTTAGTTGACATTGAGTCATATATTTGATAGGCTATGACCCCCCCACCCCTATTTCCCTGTGTAATATGTATGTGAAGATGCTAGTATCTTTTCTTCAAGAGATTTTGTGTTGAAATGAAGTACAAAAACCCACTGATGCTAATTTTAAATGTGTACAAAAAAATAACGCAGACTAACTTGAACTCTGCAACTGATATTTGGGCAAAATTTGGATAGATGTGCTGTCACATTTTATAAGACATTTGAAGTTTATACTCAGAGGTAATGTAATTTGAATACAATTTACGATAAATATATCTATAAAGCTCTGCTTACAAGGACCTTAAAGCCAATGTGAAGTTGAGACCGGAATTGACTCCTCGGATGTGCTCACGTGTGTGTTGGGAAAAATGGCTGGTTTCTAAAAGtgtagatttgaagtacagtggtGAAACTCATTAAATGTGACATTTAAAGAA

Function

NR:

description
PREDICTED: serine/threonine-protein kinase NLK

GO: NA

KEGG:

id description
K04468 NLK; nemo like kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964616.1 True 5638 mRNA 0.44 11 28562984 28655618

Neighbor

gene id symbol gene type direction distance location
LOC110507147 nos2 coding downstream 49368 28491585 ~ 28513616 (-)
LOC110507901 LOC106581268 coding downstream 71914 28486373 ~ 28491070 (-)
LOC110507896 LOC106581262 coding downstream 568975 27983086 ~ 27994009 (-)
LOC110507894 LOC106581257 coding downstream 587768 27972086 ~ 27975216 (-)
LOC110507895 LOC106581259 coding downstream 595308 27963781 ~ 27967676 (-)
LOC110507905 LOC106581273 coding upstream 23749 28679367 ~ 28682617 (-)
hsp47 hsp47 coding upstream 87674 28743292 ~ 28748005 (-)
LOC110507910 stch coding upstream 200431 28856049 ~ 28862570 (-)
LOC110507911 LOC106581244 coding upstream 207479 28863097 ~ 28897338 (-)
LOC110507264 NA coding upstream 248151 28903769 ~ 28906263 (-)
G2070785 NA non-coding downstream 7831 28554926 ~ 28555153 (-)
G2070784 NA non-coding downstream 8554 28554215 ~ 28554430 (-)
G2070761 NA non-coding downstream 22975 28539789 ~ 28540009 (-)
G2070740 NA non-coding downstream 46191 28516533 ~ 28516793 (-)
G2070722 NA non-coding downstream 108466 28454308 ~ 28454518 (-)
G2071097 NA non-coding upstream 2250 28657868 ~ 28658725 (-)
G2071051 LOC106581272 non-coding upstream 17515 28673133 ~ 28676423 (-)
G2071103 NA non-coding upstream 31340 28686958 ~ 28687228 (-)
G2071105 NA non-coding upstream 32149 28687767 ~ 28688006 (-)
G2071110 NA non-coding upstream 36525 28692143 ~ 28692354 (-)
G2070744 NA other downstream 38434 28523946 ~ 28524550 (-)
G2070530 NA other downstream 390442 28170838 ~ 28172542 (-)
LOC118944653 LOC106581256 other downstream 673626 27872709 ~ 27889358 (-)
LOC118944698 LOC106581256 other downstream 692889 27866010 ~ 27871529 (-)
G2069842 NA other downstream 1022375 27540000 ~ 27540609 (-)
G2071247 LOC106581281 other upstream 285736 28941354 ~ 28942728 (-)
zgc:165508 LOC106613118 other upstream 976294 29626155 ~ 29651489 (-)
G2072288 LOC100196662 other upstream 1174484 29822517 ~ 29833885 (-)
G2072732 NA other upstream 1740157 30395775 ~ 30396680 (-)
G2074300 NA other upstream 3372010 32027628 ~ 32027967 (-)

Expression


Co-expression Network