LOC110507905 (LOC106581273)


Basic Information

Item Value
gene id LOC110507905
gene name LOC106581273
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 28679367 ~ 28682617 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588321.2
ATGATTGTATCAATACACAGATTGCAGGAAGTATTTTTTACAGGAAGTAAACACAGCACTCTTTGACAGAACTTTATTTATTTGCCTGTTTTGTACAACAAAGGGCAATGTACATGATACAGGACCTTTCAGATCACTTACTGGAGGAGATGAGGACATCCTTTAGTTTATAGTCTTATAGTATATGCCTGCTACCAAACAACGGTGAGTCTTTAAAAGTGAAAGTTAACTTATTCCTAACAGTGGGGCATTACGAGTGTGACTGAGAAAATGGCCTCCCGACGGTCTCTCCCAGAAGACGATCTCTCCTGTCCTGTGTGCTTAAACATCTTCAGTGATCCTGTCCTCCTATCATGTAGCCACAGCTTCTGTAAAGCCTGTCTACAGGAGTACTGGAGCCTGAGAGGATTTCAGGAATGTCCCGTTTGTAGGGAAGTAATTTCAATGGGTAATCCACTCTGTAACCGGGCTCTAAAGAACCTGTGTGAGGCTGTCTTAAAGGAAAGGAGTCAGAACGTTTCAGACGGGTCTGAGGTGCTCTGCAGTCTGCATGGTGAGAAACTCAAGCTCTTCTGTATGGAGGATCAAGAGCCCATTTGTGTGGTGTGTCGTGATTCAAGGAAACATAAAAAGCATGACTGCATCCCCATACAGGAAGCTGTACAGGAACATAAGGTGAAACTCAAGACTGTATTGAACCCCCTAAAAGATAAACTGAGGCTCCTTAATGAAATCAAACTCACCTGTTATAAAACAGCAAAACATATCAAGATCCAAGCCCAGTACACAGAGAGGCAGATTAAGGAGCAGTTTAAGGAGCTGTACCAGTTTCTGCGAGAGGAAGAGGCCACCAGGATAGATGCAGTGAGGATGGAAGAGGTGCGGAAGAGTCACGGGATGAAGAACAAGATAATAGAGATGAACAGAAAAATATCATCACTTTCAGACACAATCAAAGCCATCGAACAACAGCTGAGAGTTGAAGACGTCTCATTCTTGCAGAACTACAAGGCCTCTGTGAAAAGAGCCCAGCACCCACTGCCGGATGCAGAGAGGGTTTCCGGAGCACTGATAGAAGTGGCCAAACACTTGGGCAACCTGCAGTTCAGAGTCTGGGTGAAGATGCAAGGGATTGTTCATTACACTCCTGTAATCCTGGACCCCAATACTGCAGGCACATGTCTCATTCTGTCTGAGGACTTGACCAGCTTAAGGGATGCTGATAGAGCACTACAGCTTCCTGACAACCCAGAGAGGATTGATGGATGTGTCCTAGGCTCTGAGGGTTTTAACTCAGGAACACACAGCTGGGATATTGAGAATTTGGATGGTCACTATTGGGCTGTAGGTGTGACCACTATGCATGCCAGCAGGCCTAATAATTGTAGCGGTATGCCAAATGAATCCTGGGGTGTTTGGACTACTTGTGGTGTATACCTAGAAATGTCCCCACAGCCAAATCTCCATAACCTCACAGTAGATCACTTTCCCCAAAAGATGAGAGTGCATCTGGACTGGGCCAAGGGAAAGCTGTCATTCTTTGACCTtgataaaaacacacacatacacacaatcacacacactttcacaaagACAGTCTACCCTATATTTCGTCATGATAAAACATTGAGGATCTTACCAGTGAAGACCAGTGTGACAACAGTTAAATACAACACAAACTGATGTAATAGTTTAACTGCCACAACACTGTTTCTTATCACTCTACTCATAGTCCTTAGTGTTGGAGAGGTGTGCATTGGTCTTTTCTCCACTATCTCTGAGACACACACTCGGCTCTATAACAATGGATTCTGACCCTGGTCTTATCAACAGGTGAAGCAATGAAATTGTTCATGTATCACACTCTTTATGTAGCCTAATGTTGATATTTTGTATTGATTGATCCAGTAAAAGCATTTTGATTGCTGTGGATGTTTTTCTATTGTCAGAATGCTGTGTGTAATCTGTATTCTTGCTCTTTGTCTAGTCATTGTCACATCTGTGATGTTGATCTTCATTCATTATCAGTAAACTATATTTTACTTCCTTACCAAAAGCATGTCTAACTGCATACAAATGTCCACAAGGTTTTATTAATACAATGTGAAACAA
>XM_036964684.1
ATGTATGATTGTATCAATACACAGATTGCAGGAAGTATTTTTTACAGGAAGTAAACACAGCACTCTTTGACAGAACTTTATTTATTTGCCTGTTTTGTACAACAAAGGGCAATGTACATGATACAGGACCTTTCAGATCACTTACTGGAGGAGATGAGGACATCCTTTAGTTTATAGTCTTATAGTATATGCCTGCTACCAAACAACGGTGAGTCTTTAAAAGTGAAAGTTAACTTATTCCTAACAGTGGGGCATTACGAGTGTGACTGAGAAAATGGCCTCCCGACGGTCTCTCCCAGAAGACGATCTCTCCTGTCCTGTGTGCTTAAACATCTTCAGTGATCCTGTCCTCCTATCATGTAGCCACAGCTTCTGTAAAGCCTGTCTACAGGAGTACTGGAGCCTGAGAGGATTTCAGGAATGTCCCGTTTGTAGGGAAGTAATTTCAATGGGTAATCCACTCTGTAACCGGGCTCTAAAGAACCTGTGTGAGGCTGTCTTAAAGGAAAGGAGTCAGAACGTTTCAGACGGGTCTGAGGTGCTCTGCAGTCTGCATGGTGAGAAACTCAAGCTCTTCTGTATGGAGGATCAAGAGCCCATTTGTGTGGTGTGTCGTGATTCAAGGAAACATAAAAAGCATGACTGCATCCCCATACAGGAAGCTGTACAGGAACATAAGGTGAAACTCAAGACTGTATTGAACCCCCTAAAAGATAAACTGAGGCTCCTTAATGAAATCAAACTCACCTGTTATAAAACAGCAAAACATATCAAGATCCAAGCCCAGTACACAGAGAGGCAGATTAAGGAGCAGTTTAAGGAGCTGTACCAGTTTCTGCGAGAGGAAGAGGCCACCAGGATAGATGCAGTGAGGATGGAAGAGGTGCGGAAGAGTCACGGGATGAAGAACAAGATAATAGAGATGAACAGAAAAATATCATCACTTTCAGACACAATCAAAGCCATCGAACAACAGCTGAGAGTTGAAGACGTCTCATTCTTGCAGAACTACAAGGCCTCTGTGAAAAGAGCCCAGCACCCACTGCCGGATGCAGAGAGGGTTTCCGGAGCACTGATAGAAGTGGCCAAACACTTGGGCTCAGCTCCTGTAATCCTGGACCCCAATACTGCAGGCACATGTCTCATTCTGTCTGAGGACTTGACCAGCTTAAGGGATGCTGATAGAGCACTACAGCTTCCTGACAACCCAGAGAGGATTGATGGATGTGTCCTAGGCTCTGAGGGTTTTAACTCAGGAACACACAGCTGGGATATTGAGAATTTGGATGGTCACTATTGGGCTGTAGGTGTGACCACTATGCATGCCAGCAGGCCTAATAATTGTAGCGGTATGCCAAATGAATCCTGGGGTGTTTGGACTACTTGTGGTGTATACCTAGAAATGTCCCCACAGCCAAATCTCCATAACCTCACAGTAGATCACTTTCCCCAAAAGATGAGAGTGCATCTGGACTGGGCCAAGGGAAAGCTGTCATTCTTTGACCTtgataaaaacacacacatacacacaatcacacacactttcacaaagACAGTCTACCCTATATTTCGTCATGATAAAACATTGAGGATCTTACCAGTGAAGACCAGTGTGACAACAGTTAAATACAACACAAACTGATGTAATAGTTTAACTGCCACAACACTGTTTCTTATCACTCTACTCATAGTCCTTAGTGTTGGAGAGGTGTGCATTGGTCTTTTCTCCACTATCTCTGAGACACACACTCGGCTCTATAACAATGGATTCTGACCCTGGTCTTATCAACAGGTGAAGCAATGAAATTGTTCATGTATCACACTCTTTATGTAGCCTAATGTTGATATTTTGTATTGATTGATCCAGTAAAAGCATTTTGATTGCTGTGGATGTTTTTCTATTGTCAGAATGCTGTGTGTAATCTGTATTCTTGCTCTTTGTCTAGTCATTGTCACATCTGTGATGTTGATCTTCATTCATTATCAGTAAACTATATTTTACTTCCTTACCAAAAGCATGTCTAACTGCATACAAATGTCCACAAGGTTTTATTAATACAATGTGAAACAA
>XM_021588322.2
CATGTATGATTGTATCAATACACAGATTGCAGGAAGTATTTTTTACAGGAAGTAAACACAGCACTCTTTGACAGAACTTTATTTATTTGCCTGTTTTGTACAACAAAGGGCAATGTACATGATACAGGACCTTTCAGATCACTTACTGGAGGAGATGAGGACATCCTTTAGTTTATAGTCTTATAGTATATGCCTGCTACCAAACAACGGTGAGTCTTTAAAAGTGAAAGTTAACTTATTCCTAACAGTGGGGCATTACGAGTGTGACTGAGAAAATGGCCTCCCGACGGTCTCTCCCAGAAGACGATCTCTCCTGTCCTGTGTGCTTAAACATCTTCAGTGATCCTGTCCTCCTATCATGTAGCCACAGCTTCTGTAAAGCCTGTCTACAGGAGTACTGGAGCCTGAGAGGATTTCAGGAATGTCCCGTTTGTAGGGAAGTAATTTCAATGGGTAATCCACTCTGTAACCGGGCTCTAAAGAACCTGTGTGAGGCTGTCTTAAAGGAAAGGAGTCAGAACGTTTCAGACGGGTCTGAGGTGCTCTGCAGTCTGCATGGTGAGAAACTCAAGCTCTTCTGTATGGAGGATCAAGAGCCCATTTGTGTGGTGTGTCGTGATTCAAGGAAACATAAAAAGCATGACTGCATCCCCATACAGGAAGCTGTACAGGAACATAAGGTGAAACTCAAGACTGTATTGAACCCCCTAAAAGATAAACTGAGGCTCCTTAATGAAATCAAACTCACCTGTTATAAAACAGCAAAACATATCAAGATCCAAGCCCAGTACACAGAGAGGCAGATTAAGGAGCAGTTTAAGGAGCTGTACCAGTTTCTGCGAGAGGAAGAGGCCACCAGGATAGATGCAGTGAGGATGGAAGAGGTGCGGAAGAGTCACGGGATGAAGAACAAGATAATAGAGATGAACAGAAAAATATCATCACTTTCAGACACAATCAAAGCCATCGAACAACAGCTGAGAGTTGAAGACGTCTCATTCTTGCAGAACTACAAGGCCTCTGTGAAAAGAGCCCAGCACCCACTGCCGGATGCAGAGAGGGTTTCCGGAGCACTGATAGAAGTGGCCAAACACTTGGGCAACCTGCAGTTCAGAGTCTGGGTGAAGATGCAAGGGATTGTTCATTACAAGTTAAAATCTCTCATCAGCTCCTGTAATCCTGGACCCCAATACTGCAGGCACATGTCTCATTCTGTCTGAGGACTTGACCAGCTTAAGGGATGCTGATAGAGCACTACAGCTTCCTGACAACCCAGAGAGGATTGATGGATGTGTCCTAGGCTCTGAGGGTTTTAACTCAGGAACACACAGCTGGGATATTGAGAATTTGGATGGTCACTATTGGGCTGTAGGTGTGACCACTATGCATGCCAGCAGGCCTAATAATTGTAGCGGTATGCCAAATGAATCCTGGGGTGTTTGGACTACTTGTGGTGTATACCTAGAAATGTCCCCACAGCCAAATCTCCATAACCTCACAGTAGATCACTTTCCCCAAAAGATGAGAGTGCATCTGGACTGGGCCAAGGGAAAGCTGTCATTCTTTGACCTtgataaaaacacacacatacacacaatcacacacactttcacaaagA
>XR_005039953.1
GTATGATTGTATCAATACACAGATTGCAGGAAGTATTTTTTACAGGAAGTAAACACAGCACTCTTTGACAGAACTTTATTTATTTGCCTGTTTTGTACAACAAAGGGCAATGTACATGATACAGGACCTTTCAGATCACTTACTGGAGGAGATGAGGACATCCTTTAGTTTATAGTCTTATAGTATATGCCTGCTACCAAACAACGGTGAGTCTTTAAAAGTGAAAGTTAACTTATTCCTAACAGTGGGGCATTACGAGTGTGACTGAGAAAATGGCCTCCCGACGGTCTCTCCCAGAAGACGATCTCTCCTGTCCTGTGTGCTTAAACATCTTCAGTGATCCTGTCCTCCTATCATGTAGCCACAGCTTCTGTAAAGCCTGTCTACAGGAGTACTGGAGCCTGAGAGGATTTCAGGAATGTCCCGTTTGTAGGGAAGTAATTTCAATGGGTAATCCACTCTGTAACCGGGCTCTAAAGAACCTGTGTGAGGCTGTCTTAAAGGAAAGGAGTCAGAACGTTTCAGACGGGTCTGAGGTGCTCTGCAGTCTGCATGGTGAGAAACTCAAGCTCTTCTGTATGGAGGATCAAGAGCCCATTTGTGTGGTGTGTCGTGATTCAAGGAAACATAAAAAGCATGACTGCATCCCCATACAGGAAGCTGTACAGGAACATAAGGTGAAACTCAAGACTGTATTGAACCCCCTAAAAGATAAACTGAGGCTCCTTAATGAAATCAAACTCACCTGTTATAAAACAGCAAAACATATCAAGATCCAAGCCCAGTACACAGAGAGGCAGATTAAGGAGCAGTTTAAGGAGCTGTACCAGTTTCTGCGAGAGGAAGAGGCCACCAGGATAGATGCAGTGAGGATGGAAGAGGTGCGGAAGAGTCACGGGATGAAGAACAAGATAATAGAGATGAACAGAAAAATATCATCACTTTCAGACACAATCAAAGCCATCGAACAACAGCTGAGAGTTGAAGACGTCTCATTCTTGCAGAACCCATCATCAGAGCAGTATTGAACACTAAACGTTCTTCCAGAGCCCAGCACCCACTGCCGGATGCAGAGAGGGTTTCCGGAGCACTGATAGAAGTGGCCAAACACTTGGGCAACCTGCAGTTCAGAGTCTGGGTGAAGATGCAAGGGATTGTTCATTACACTCCTGTAATCCTGGACCCCAATACTGCAGGCACATGTCTCATTCTGTCTGAGGACTTGACCAGCTTAAGGGATGCTGATAGAGCACTACAGCTTCCTGACAACCCAGAGAGGATTGATGGATGTGTCCTAGGCTCTGAGGGTTTTAACTCAGGAACACACAGCTGGGATATTGAGAATTTGGATGGTCACTATTGGGCTGTAGGTGTGACCACTATGCATGCCAGCAGGCCTAATAATTGTAGCGGTATGCCAAATGAATCCTGGGGTGTTTGGACTACTTGTGGTGTATACCTAGAAATGTCCCCACAGCCAAATCTCCATAACCTCACAGTAG
>XR_005039954.1
GTATGATTGTATCAATACACAGATTGCAGGAAGTATTTTTTACAGGAAGTAAACACAGCACTCTTTGACAGAACTTTATTTATTTGCCTGTTTTGTACAACAAAGGGCAATGTACATGATACAGGACCTTTCAGATCACTTACTGGAGGAGATGAGGACATCCTTTAGTTTATAGTCTTATAGTATATGCCTGCTACCAAACAACGGTGAGTCTTTAAAAGTGAAAGTTAACTTATTCCTAACAGTGGGGCATTACGAGTGTGACTGAGAAAATGGCCTCCCGACGGTCTCTCCCAGAAGACGATCTCTCCTGTCCTGTGTGCTTAAACATCTTCAGTGATCCTGTCCTCCTATCATGTAGCCACAGCTTCTGTAAAGCCTGTCTACAGGAGTACTGGAGCCTGAGAGGATTTCAGGAATGTCCCGTTTGTAGGGAAGTAATTTCAATGGGTAATCCACTCTGTAACCGGGCTCTAAAGAACCTGTGTGAGGCTGTCTTAAAGGAAAGGAGTCAGAACGTTTCAGACGGGTCTGAGGTGCTCTGCAGTCTGCATGGTGAGAAACTCAAGCTCTTCTGTATGGAGGATCAAGAGCCCATTTGTGTGGTGTGTCGTGATTCAAGGAAACATAAAAAGCATGACTGCATCCCCATACAGGAAGCTGTACAGGAACATAAGGTGAAACTCAAGACTGTATTGAACCCCCTAAAAGATAAACTGAGGCTCCTTAATGAAATCAAACTCACCTGTTATAAAACAGCAAAACATATCAAGATCCAAGCCCAGTACACAGAGAGGCAGATTAAGGAGCAGTTTAAGGAGCTGTACCAGTTTCTGCGAGAGGAAGAGGCCACCAGGATAGATGCAGTGAGGATGGAAGAGGTGCGGAAGAGTCACGGGATGAAGAACAAGATAATAGAGATGAACAGAAAAATATCATCACTTTCAGACACAATCAAAGCCATCGAACAACAGCTGAGAGTTGAAGACGTCTCATTCTTGCAGAACCCATCATCAGAGCAGTATTGAACACTAAACGTTCTTCCAGAGCCCAGCACCCACTGCCGGATGCAGAGAGGGTTTCCGGAGCACTGATAGAAGTGGCCAAACACTTGGGCTCAGCTCCTGTAATCCTGGACC

Function

NR:

description
tripartite motif-containing protein 35-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588321.2 False 2112 mRNA 0.43 6 28679367 28682612
XM_036964684.1 False 2071 mRNA 0.43 6 28679367 28682616
XM_021588322.2 False 1618 mRNA 0.45 6 28679885 28682617
XR_005039953.1 False 1502 mRNA 0.45 5 28679999 28682614
XR_005039954.1 True 1139 mRNA 0.45 5 28680317 28682614

Neighbor

gene id symbol gene type direction distance location
LOC110507903 LOC106581270 coding downstream 23749 28562984 ~ 28655618 (-)
LOC110507147 nos2 coding downstream 165751 28491585 ~ 28513616 (-)
LOC110507901 LOC106581268 coding downstream 188297 28486373 ~ 28491070 (-)
LOC110507896 LOC106581262 coding downstream 685358 27983086 ~ 27994009 (-)
LOC110507894 LOC106581257 coding downstream 704151 27972086 ~ 27975216 (-)
hsp47 hsp47 coding upstream 60675 28743292 ~ 28748005 (-)
LOC110507910 stch coding upstream 173432 28856049 ~ 28862570 (-)
LOC110507911 LOC106581244 coding upstream 180480 28863097 ~ 28897338 (-)
LOC110507264 NA coding upstream 221152 28903769 ~ 28906263 (-)
LOC110507148 med17 coding upstream 251143 28933760 ~ 28935659 (-)
G2071051 LOC106581272 non-coding downstream 2944 28673133 ~ 28676423 (-)
G2071097 NA non-coding downstream 20642 28657868 ~ 28658725 (-)
G2070785 NA non-coding downstream 124214 28554926 ~ 28555153 (-)
G2070784 NA non-coding downstream 124937 28554215 ~ 28554430 (-)
G2070761 NA non-coding downstream 139358 28539789 ~ 28540009 (-)
G2071103 NA non-coding upstream 4341 28686958 ~ 28687228 (-)
G2071105 NA non-coding upstream 5150 28687767 ~ 28688006 (-)
G2071110 NA non-coding upstream 9526 28692143 ~ 28692354 (-)
G2071113 NA non-coding upstream 14827 28697444 ~ 28697676 (-)
G2071116 NA non-coding upstream 17940 28700557 ~ 28700862 (-)
G2070744 NA other downstream 154817 28523946 ~ 28524550 (-)
G2070530 NA other downstream 506825 28170838 ~ 28172542 (-)
LOC118944653 LOC106581256 other downstream 790009 27872709 ~ 27889358 (-)
LOC118944698 LOC106581256 other downstream 809272 27866010 ~ 27871529 (-)
G2069842 NA other downstream 1138758 27540000 ~ 27540609 (-)
G2071247 LOC106581281 other upstream 258737 28941354 ~ 28942728 (-)
zgc:165508 LOC106613118 other upstream 949295 29626155 ~ 29651489 (-)
G2072288 LOC100196662 other upstream 1147485 29822517 ~ 29833885 (-)
G2072732 NA other upstream 1713158 30395775 ~ 30396680 (-)
G2074300 NA other upstream 3345011 32027628 ~ 32027967 (-)

Expression


Co-expression Network