Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110507148 |
| gene name | med17 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048591.1 |
| NCBI id | CM023245.2 |
| chromosome length | 51556237 |
| location | 28933760 ~ 28935659 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| med17 | Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Human ortholog(s) of this gene implicated in infantile cerebral and cerebellar atrophy with postnatal progressive microcephaly. Orthologous to human MED17 (mediator complex subunit 17). |
| description |
|---|
| Mediator of RNA polymerase II transcription subunit 17 |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0016592 | mediator complex | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110507148 | True | 910 | mRNA | 0.50 | 5 | 28933760 | 28935659 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110507264 | NA | coding | downstream | 27497 | 28903769 ~ 28906263 (-) |
| LOC110507911 | LOC106581244 | coding | downstream | 36422 | 28863097 ~ 28897338 (-) |
| LOC110507910 | stch | coding | downstream | 71190 | 28856049 ~ 28862570 (-) |
| hsp47 | hsp47 | coding | downstream | 185755 | 28743292 ~ 28748005 (-) |
| LOC110507905 | LOC106581273 | coding | downstream | 251143 | 28679367 ~ 28682617 (-) |
| LOC110507149 | LOC106581284 | coding | upstream | 35675 | 28971334 ~ 29004207 (-) |
| LOC110507915 | LOC106581294 | coding | upstream | 172136 | 29107795 ~ 29166562 (-) |
| LOC110507150 | LOC106581286 | coding | upstream | 244965 | 29180624 ~ 29186077 (-) |
| LOC110507151 | LOC106581293 | coding | upstream | 282206 | 29217865 ~ 29251545 (-) |
| LOC110507265 | NA | coding | upstream | 342336 | 29277995 ~ 29285413 (-) |
| G2071197 | NA | non-coding | downstream | 87599 | 28845326 ~ 28846161 (-) |
| G2071200 | NA | non-coding | downstream | 91814 | 28837035 ~ 28841946 (-) |
| G2071123 | NA | non-coding | downstream | 192507 | 28737270 ~ 28741253 (-) |
| G2071135 | LOC105014307 | non-coding | downstream | 196635 | 28736564 ~ 28737125 (-) |
| G2071125 | NA | non-coding | downstream | 216076 | 28717478 ~ 28717684 (-) |
| G2071250 | NA | non-coding | upstream | 5105 | 28940764 ~ 28944529 (-) |
| G2071247 | LOC106581281 | non-coding | upstream | 5754 | 28941354 ~ 28942728 (-) |
| G2071298 | NA | non-coding | upstream | 105876 | 29041535 ~ 29041746 (-) |
| G2071309 | NA | non-coding | upstream | 116831 | 29052490 ~ 29052698 (-) |
| G2071316 | NA | non-coding | upstream | 122631 | 29058290 ~ 29058667 (-) |
| G2070744 | NA | other | downstream | 409210 | 28523946 ~ 28524550 (-) |
| G2070530 | NA | other | downstream | 761218 | 28170838 ~ 28172542 (-) |
| LOC118944653 | LOC106581256 | other | downstream | 1044402 | 27872709 ~ 27889358 (-) |
| LOC118944698 | LOC106581256 | other | downstream | 1063665 | 27866010 ~ 27871529 (-) |
| G2069842 | NA | other | downstream | 1393151 | 27540000 ~ 27540609 (-) |
| zgc:165508 | LOC106613118 | other | upstream | 696253 | 29626155 ~ 29651489 (-) |
| G2072288 | LOC100196662 | other | upstream | 894443 | 29822517 ~ 29833885 (-) |
| G2072732 | NA | other | upstream | 1460116 | 30395775 ~ 30396680 (-) |
| G2074300 | NA | other | upstream | 3091969 | 32027628 ~ 32027967 (-) |
