LOC110507150 (LOC106581286)


Basic Information

Item Value
gene id LOC110507150
gene name LOC106581286
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 29180624 ~ 29186077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587004.2
CCTGCCTCCTCTTCTACATATTTTCTTCCTCCATCCATTCAtctgtccctccatctcaccaacaGATCTACGAGGAAGAGAAATAAGAATTGAGAGAAGGAGGACAAACAGAGAGAAGAGCCCAAAACGACAAAACAGAGGACAGACAGTCAAACAACGAGGGAAGAAtttaaccacagagagagtgacaacagacagagaacatgCTCTTCAAAGTACAGaGATCCATCAGACCCATGTCTGCTACACTGAGAGGACTCCACCAGTCTGCCCTGGAAGcGATACAGCGTCCAGCCTCAGAGGACAGTGTGACGGACAGTTTTGGACAGTTTATCCAGGGTGTCCAGCCCCACCATCTGACCCCCACCCTGCTCCACCGTAGCAAGAGGATGGTTCTGGACTCCATCGGAGTGGGACTACTGGGCAGCACCACACACGTCTTCCAGCTGGCCCTACAGCACTGTCAGCACATGTATGCTCCCGATGACGTCAGTTCTGTTTACGGACGCAGAGGAATCAGACTCTCCCCAACCCTTGCTGCCTTCGTCAATGGAGTGGCCACCCACTCCATGGACTTTGACGACACCTGGCACCCTGCTACTCACCCGTCGGGGGCGGTCCTTCCTGCCCTACTGGCAGTCAGCGATATGCTGCCCAACAACAGAAAGCCTAGTGGGCGGGACTTCCTGTTGGCCTTCAACGTTGGGATAGAGGTCCAGGGACGCCTGATGAGGTTCTCCAACGAGGCTCAGAATATCCCCAAGAGATTCCACCCCCCCACCGTCGTGGGTACTCTGGGTAGTGCTGCAGCCTGCGCCCGCCTCCTCTCTCTGGAACGCTCTCAGTGTAGCCACGCCCTGGCCATCGCTGCCAGCCTATCAGGAGCCCCCATGGCGAATGCGGCCACCCAGTCTAAACCCCTCCACATCGGAAACGCTGCGCGGCTGGGGCTGGAGGCGGCTCTGCTGTCCTCAATAGGACTGGAGGCCTCTCCCAGGGTCCTGGATGACACCTCCGGGGTCGCGGGGTTCAGTGCCTTCTACGAGGACTACGCCCCACAGCCTCTGACGTCTCCAGAGGAGGTGGGGTTGCGGTTCCTACTAGAGGACCAGGACATGGGGTTCAAGAGGTTCCCGGCCCACCTGGGGATGCACTGGGTGGCCGACGCTGCTGCCTCAGTGCACAAGCTACTGCTGGGGGAGCTGGGGTCACAGGGGATGGGGCGAGGGTCACAGGTTGTAGGTCAGGTGCAGGACATTTTGCTGAGGGTTCCCCACTCCAAGTACATTAACCGTCCATTCCCGGAGTCGGAGCACCAGGCCAGACACTCCTTCCAGTTCAATGCCTGCTCTGCACTGCTGGATGGGGAGGTCACCGTGTTCTCATTCTCCCAGGAGGCACTACAGCGACCCGACCTGCTGGCCTTGCTGGGGCGTGTCCGCGTTGAGCATCCCCATGACAACCCGGCTAACTTTGACAACATGTATGGCGAGGTGCAGGTGACGCTGGTGGGTGGGGATGTGCTGAAGGGACGCTGTGATACTTTCTATGGTCACTGGCGCAACCCGCTGACCAATGAGAGCCTGAAGAAGAAGTTCTGTAGCAACGCTGGTGCGGTCCTACCCAGGGAAAAGGTGGAGGGGCTGATTGAGGCTGTAGAGGGACTGGACAGACTGGAGGACTGCTCTCCTCTACTGGCACAGCTGCAGtgaaacacacacatcacagacgtgcacacacacacaaacaaatatacACCTCATCACATCACTCTTTTCTGACCAGCTGATCTTTCTGCATTTCACATCAGGTGTCTATAGACATATACAGGCCATGAGCTTGCATCTTCAGGTGTGCATGACTTATGTTGGTTTTGGATGTTCTGTttgccagtggtgtaaagtagttaagtaaaaatactttaaagtactacttaagcagTTTTTGGGGGTTTTCATTTTATTTCACCACATTCATCACATTCACCACAACATAGTGAATGgcagcatagcctagtggtttgagtgttggactagtaaccgaaaggttgcaagacagaatccccgagctgacaaggtacaaaatctgctgttcttcccctgaacaaggcagttaacccactgttcctat

Function

NR:

description
cis-aconitate decarboxylase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587004.2 True 2130 mRNA 0.55 6 29180624 29186077

Neighbor

gene id symbol gene type direction distance location
LOC110507915 LOC106581294 coding downstream 14062 29107795 ~ 29166562 (-)
LOC110507149 LOC106581284 coding downstream 176417 28971334 ~ 29004207 (-)
LOC110507148 med17 coding downstream 244965 28933760 ~ 28935659 (-)
LOC110507264 NA coding downstream 274361 28903769 ~ 28906263 (-)
LOC110507911 LOC106581244 coding downstream 283286 28863097 ~ 28897338 (-)
LOC110507151 LOC106581293 coding upstream 31788 29217865 ~ 29251545 (-)
LOC110507265 NA coding upstream 91918 29277995 ~ 29285413 (-)
zgc:165508 LOC106613118 coding upstream 443361 29626155 ~ 29651489 (-)
alp3 LOC106580686 coding upstream 472240 29658317 ~ 29672478 (-)
LOC110507923 NA coding upstream 497682 29683759 ~ 29756087 (-)
G2071487 NA non-coding downstream 38586 29140223 ~ 29142038 (-)
G2071316 NA non-coding downstream 121957 29058290 ~ 29058667 (-)
G2071309 NA non-coding downstream 127926 29052490 ~ 29052698 (-)
G2071298 NA non-coding downstream 138878 29041535 ~ 29041746 (-)
G2071250 NA non-coding downstream 236095 28940764 ~ 28944529 (-)
G2071557 NA non-coding upstream 81520 29267597 ~ 29274444 (-)
G2071588 NA non-coding upstream 123715 29309792 ~ 29310184 (-)
G2071589 NA non-coding upstream 127170 29313247 ~ 29340074 (-)
G2071590 LOC106581290 non-coding upstream 157245 29343322 ~ 29343833 (-)
G2071247 LOC106581281 other downstream 237896 28941354 ~ 28942728 (-)
G2070744 NA other downstream 656074 28523946 ~ 28524550 (-)
G2070530 NA other downstream 1008082 28170838 ~ 28172542 (-)
LOC118944653 LOC106581256 other downstream 1291266 27872709 ~ 27889358 (-)
LOC118944698 LOC106581256 other downstream 1310529 27866010 ~ 27871529 (-)
G2072288 LOC100196662 other upstream 644025 29822517 ~ 29833885 (-)
G2072732 NA other upstream 1209698 30395775 ~ 30396680 (-)
G2074300 NA other upstream 2841551 32027628 ~ 32027967 (-)
G2076236 NA other upstream 3692712 32878789 ~ 32880888 (-)

Expression


Co-expression Network