LOC110507921 (psmd2)


Basic Information

Item Value
gene id LOC110507921
gene name psmd2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 29756570 ~ 29777646 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588341.2
TCGATGTCAGCAAACTTCCACGGTTCTGAAGAGAGGAAGTCTCCTGTTCTTCAGTTTATCCGTAGCCGAATTTCGTAAAACAGCAACCATGGAGGACgcaaaaaagaaagagaaaaagcagtccgaaAAGACAGAGGAAAAGGAGATTAAGCCCACAGGGAAGGACAAGGATAAAAAAGAAGAGCAAGAACTGTCTGATGAGGACAAACAGCTGCAAGAAGAGCTGGAGATGATGGTGGAGAGGCTTGGTGAGACGGACACGTCTCTATACCGGCCTGCTCTAGAGGAGCTGCGCAGGCAGATCCGCTCTTCCACCACCTCCATGACCTCTGTGCCTAAGCCCCTGAAGTTCCTGCGGCCACACTATGGCAAGCTCAAAGAGATCTACGAGGGCATGGCGCCTGGCGAGAACAAGAGTTTCTGTGCGGACGTGGTGTCGGTCTTGGCCATGACAATGAGTGGGGAGCGGGAGTGTCTGAAATACCGTCTGCTGGGCTCCCAGGAGGAGCTGGCGTCCTGGGGTCATGAATACGTCAGGCACCTAGCAGGCGAGGTGGCCAAAGAGTGGCAGGAGGTTGAGGAGAGTGATAAGACGCAACAGGAGACTCTGCTAAAGCTTGTGAAGGAGATTGTGCCCTACAACATGGCTCACAACGCTGAGCACGAGGCCTGTGACCTGTTGATGGAGATTGAGAGACTAGATATGCTGGAGCTCTATATAGATGACAATGCATATGCCAAGGTCTGCCTCTACCTCACCAGCTGTGTGAGCTATGTCCCTGAGCCAGAGAACTCTGCCCTGTTGAAGTGTTCCCTGAACATCTTCAGGAAGTTTAACCGTTACCCAGAGGCCCTGAGGCTGGCCCTGATGCTCAACGATGTGGAACTGGTGGAGAACATCTTCACCTCCTGCAAAGACATCGTGATCCAGAAGGAGATGGCCTTCATGTTGGGACGACACGGCATGTTCCTGGAGCTCAACGAGGACGTGGAGGACTACGAGGACCTGACGGAGATCATGTCCAACGTCCAGCTCAACAGCAATTTCCTGGCCCTGGCCCGAGAGTTGGACATCATGGAACCCAAAGTCCCAGATGACATCTACAAAACCCACCTAGAGAACAACAGGTTTGGAGGAAGTGGTTCCCAGGTGGACTCTGCTCGTATGAACCTGGCATCCTCGTTTGTCAACGGCTTCGTCAACGCAGGGTTCGGACAGGACAAGCTGCTCACAGATGATGGCAACAAATGGCTGTACAAAAACAAAGATCATGGTATGCTGAGTGCTGCAGCCTCTCTGGGGATGATCCTGCTGTGGGATGTGGACGGTGGTCTGACACAGATAGACAAATACCTCTACTCCTCAGAGGACTACATAAAGTCGGGGGCCCTCCTGGCTTGTGGCATAGTGAACTCTGGGGTTAGGAACGAATGTGACCCTGCCCTGGCTCTGCTGTCAGACTACGTCCTCCACAACAGCAACGTCATGCGGATTGGAGCCATCTTCGGCCTGGGCCTGGCGTACGCTGGCTCGAACCGTGAGGATGTCCTCTCTCTGCTGCTGCCTGTCATGGTAGACTCCAAGTCCAGCATGGAGGTGGCAGGTGTGACGGCACTGGCTTGCGGTATGATCGCCGTGGGCTCGTGTAACGGTGATGTCACCTCCACCATCGTCCAGACCATCATGGAGAAGAGTGAGCTGGAGCTGAAAGACACATACGCCCGCTGGCTGCCCCTGGGCCTGGGCCTCAACCACCTGGGTAAAGGGGAGGCCATTGAGACCACCCTGGCAGCGCTGCAGGTGGTGCCTGAGCCCTTCCGCAGCTTCGCCAACACCCTGGTGGACGTCTGTGCCTATGCAGGTTCTGGTAACGTACTGAAGGTGCAGCAGCTTCTCCACATCTGCAGTGAGCACTATGAAGCCAAGGAAAAGGAGGAAGAAAAAGACAAGAAGGATAAGAAGGACAAAGACAAGAAAGAGAGTGCAGCCGACATGGGCTCTCACCAGGGTGTGGCTGTCCTGGGTATTGCACTCATTGCCATGGGAGAAGAAATTGGCTCAGAGATGGCACTACGGGCATTTGGGCACCTGTTGCGGTATGGAGAGCCTACTCTGAGGCGTGCAGTGCCTCTGGCCTTGGCCCTGATCTCCGTGTCGAATCCTCGCCTCAACATCCTGGACACACTCAGCAAGTTCTCCCACGATGCTGACCCAGAGGTTTCCCACAACTCCATCTTTGCCATGGGCATGGTGGGCAGCGGAACAAACAATGCCCGCCTGGCTGCCATGCTGAGGCAGCTGGCTCAGTACCATGCCAAAGACCCCAACAACCTCTTCATGGTCCGACTGGCACAGGGTCTGACTCACCTGGGTAAAGGGACATTGACGCTGTGTCCGTACCACAGTGACAGGCAGCTGATGAGTCAGGTGGCCGTGGCAGGACTACTCACTGTCCTCGTCTCCTTCCTCGACGTCAAGAACATAATCCTGGGGAAGTCTCACTACGTCCTCTACGGCCTGGTGGCTGCCATGCAGCCCCGTATGCTGGTCACCTTCGACGAGGAGCTGAGACCGCTGCCCGTGTCCGTCAGGGTGGGACAGGCGGTGGACGTAGTTGGCCAGGCCGGTAAGCCCAAAGCCATCACAGGTTTCCAAACCCACACCACGCCGGTGCTCCTGGCCCATGGAGAGAGGGCAGAGCTGGCCACAGAGGAGTATCTCCCCGTCACCCCCATCCTGGAGGGCTTTGTCATCCTCCGCAAGAACCCCAACTACGATGCCTAGATTGTGCCCTATTGTCCTCCCCTGGTACCCACGCTACTCTCCTTACCGGTCTCTCGTTGGTAGCCCTCCCTGACTCTTTTAGACCTCGTATTTTACTACTTTATTCCATGTCTGAAAAGAGCCAGGAAGGCCTACCCCTCTTTCTCTTGTCAACAGCCTCTGTGAAAATATATGGTTGTGTTCTGGGTGGTCAAACTAACCGGCGCAGGGAGTGGAAACTGTCCCCTCATTCACACTATTTAGATTGGATTCCTCTTtgttatgatctaggatcagttcctcATAAATATATTAAACCAGCTCTTTTAGGCTCCACAAATATATAACTGATCTATGGTCAGCTGTCAGAAGGGAACTGTTCAGCCTCTCCCTGCTTCTCATTCAGCCTCCAAAGCTACATTTTCACAGGctttttttgaccaatcagatcatttTCAGAGCAGGTCTGATTGGTCTGAAGACCAATTTagtggaagaaaaaaaactgaattgggctgcctgtgtaaatgcagccctAGTGATGAACAACATAAGCTCAGTCCACATCAATACTACAACCGGTTTCTCTTTCCCACATGACAACCTCCTTTTTGTAATTAGAGCATGGAAAATGTGTCCTCTTCATCATTCAGTTTTGTTGGTTTTGTTACAGTACTGTAAAAGGTTAAAATAAAAGTTAGAAACTAA

Function

symbol description
psmd2 Predicted to enable enzyme regulator activity. Acts upstream of or within retina development in camera-type eye. Predicted to be part of proteasome complex. Is expressed in eye and neural tube. Orthologous to human PSMD2 (proteasome 26S subunit ubiquitin receptor, non-ATPase 2).

NR:

description
26S proteasome non-ATPase regulatory subunit 2

GO:

id name namespace
GO:0042176 regulation of protein catabolic process biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0000502 proteasome complex cellular_component
GO:0030234 enzyme regulator activity molecular_function

KEGG:

id description
K03028 PSMD2, RPN1; 26S proteasome regulatory subunit N1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588341.2 True 3472 mRNA 0.53 20 29756570 29777646

Neighbor

gene id symbol gene type direction distance location
LOC110507923 NA coding downstream 483 29683759 ~ 29756087 (-)
alp3 LOC106580686 coding downstream 84092 29658317 ~ 29672478 (-)
zgc:165508 LOC106613118 coding downstream 105081 29626155 ~ 29651489 (-)
LOC110507265 NA coding downstream 471157 29277995 ~ 29285413 (-)
LOC110507151 LOC106581293 coding downstream 505025 29217865 ~ 29251545 (-)
LOC110507919 LOC106580690 coding upstream 76811 29854457 ~ 29860929 (-)
LOC110507916 LOC106591944 coding upstream 103008 29880654 ~ 29884496 (-)
LOC110507932 kcne4 coding upstream 153981 29931627 ~ 29932989 (-)
LOC110507928 acsl3 coding upstream 159257 29936903 ~ 29972053 (-)
LOC110507931 LOC106581313 coding upstream 212514 29990160 ~ 29994173 (-)
G2072267 NA non-coding downstream 50061 29705619 ~ 29706509 (-)
G2071993 NA non-coding downstream 90817 29664575 ~ 29665753 (-)
G2071983 NA non-coding downstream 99136 29657111 ~ 29657434 (-)
G2071963 NA non-coding downstream 131225 29625136 ~ 29625345 (-)
G2072288 LOC100196662 non-coding upstream 44871 29822517 ~ 29833885 (-)
G2072292 NA non-coding upstream 59716 29837362 ~ 29837950 (-)
G2072294 NA non-coding upstream 60611 29838257 ~ 29838479 (-)
G2072295 NA non-coding upstream 61505 29839151 ~ 29839519 (-)
G2072296 NA non-coding upstream 62266 29839912 ~ 29840192 (-)
G2071247 LOC106581281 other downstream 813842 28941354 ~ 28942728 (-)
G2070744 NA other downstream 1232020 28523946 ~ 28524550 (-)
G2070530 NA other downstream 1584028 28170838 ~ 28172542 (-)
LOC118944653 LOC106581256 other downstream 1867212 27872709 ~ 27889358 (-)
G2072732 NA other upstream 618129 30395775 ~ 30396680 (-)
G2074300 NA other upstream 2249982 32027628 ~ 32027967 (-)
G2076236 NA other upstream 3101143 32878789 ~ 32880888 (-)
G2077617 NA other upstream 5338736 35116382 ~ 35154043 (-)

Expression


Co-expression Network