LOC110507916 (LOC106591944)


Basic Information

Item Value
gene id LOC110507916
gene name LOC106591944
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 29880654 ~ 29884496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588337.2
CACGAGTTAGGTGGCGCCTCATATAACCGGAGGagctgtccccggtgctgaacaCAGAGAATCCCTGCTCTTGGAGATGCTAAATTCACTCACGACTATCGATTGAAACTATTTTGCAGAGGCTGAAGACACCATGCCGTCACTCCCCAAGCTCTCCTCTGCAGGGAtggccttcctcctctccctgctccatcTCCTACTCCTGGGCTCCGGCAGTGCCCAGGGGGCCTCTCTCAGAGAACACAGACTGAGGGGCAGTGAGCTGGACCCCCAGCGAGGAGACACCCCCTACCTCCCCCCCAATGCAGACATGCTCAAGGCCCTGGAGTACATTGAGAGCCTCCGCCAGCGGACCGGGGCGTCAGCCCCACAGGAGCAGGCTTCCCTCACCCTAGACTATGACACCACCAACATGGACACAGACTCAGAGAAACTCCTCTCCATGCTGAGGCTACCCTCTCCTGCCCAGACCAGTCAGAGTAATATAGGCCAAGGGCAGGACCaagatgaggatgatgaggaagGCAACAAGGAGAACAAGACCCATGAGTGGCTACAGGCGGTACTGAATACCCTCCAGCAGACCAAGAAGGGCCCCAAGCCAGCCCCTGTGAGGCCCAGTGCAGCCCGCCATGCTCTGGGCAAAGGGCGGAGACCAGCTAAGGAGGAGGACAGCCAGGTGGGAGAGGGCGTGGCGTATCCGTGGACGCAGCGTGCTAGCCGGCCTCACAGGAAGTACCCGCTGATGTTTGAAGATGAAGAGGACGGTGAGGGGGAGGAAGAAGGCAGAGTCCAGGGCCGTGAGAGCCCCTTCAAACGCACCAATGAGAACATGGAGGGGAAGTACACGCCCCAGAACCTGGCCAATCTGCAGTCTGTGTTTGAGGAACTGGGGAGGATAGCCAATGCCAAGGCTGGACACAAACGCCAGACtgaggatgatggtgatgatgacatGTTCAAGGTGAGGAACCTGGCCTATGAGGATGTGACAGGGGGAGAGGATTGGTCGCCCCTAGAGGAGCAGATGGATAAGGGGGAcgaagagagagacaacaggcAGGAGTTTGACAGAGGCTTGgaggatgatgaagatgatgatgataatgaagaTGATGAGGAGATTGATGAAGTCAAGCGATCAAGTCAGCTAGGTCCAAGAGAATATGACCCAGATGACTACTACCTTCTGAAGGTGCTGGAGAAAACAGAGCAGGAGGAGCGGAAGAGAGAgctagaagaagaggaggagcagaagagagagctagaagaagaggaggaacagaagagagagctagaagaagaggaggagcagaagagagagctagaagaagaggaggagagggaagagaggagggcagCTCAAACTCAGTACAGTGACAAGGTAGATCCACAGGCCATTTACCAGCTCATCCAAATCTCCCAGAAACTACAAATCCCACCAGAAGACCTGATGGACATGCTGAAGAGTGGGGAGATGACaaaacaggacaggacaccacTGAGGACAAAGGCACAGTCTTGGACACCTAATCTGGCCAGGGTAGAGGACAAACTAACTCAGATCTCCTCTCACCAAAAAAATAAGATCCctccagagacattcttcaacaGGCTGCCTGAGACCCAAACAAGCAACATCCCGGAAGAAATAAACACAGAAGACATTCTAAAAATCCTCGGGCTGGGAAGCGTGGCAAATCAGAACGCACCTGCACTCAAGAAGCAGAAACAGCATACAAGCCCGCCGTCAAGGTTTTACGCGCCAGCTGGAAAGCAGAAAAACTACATGTTCTCTGAGCCAAACGTCCCAGAGAAAGGAAAGGACGACTACGACAACACTGTCAATGAAGACGAGCTGTCGACTTATCTGGCTGCCCAGATGTTGGCACAGTATCCGCAGACAGCAAACCAAAAAAAGCGCACCTCGCAGCCTCCCTCACAAGACCATCAGCTCGTGCTGGGAACGTTCGAGCAGGCGATACAGGACTACTTTGACCAAATGGACTCAGATAAAAGCCTGCCTCAGAAAAGACAGTCAGATCCCAAGGAGGACACGGGCAATGTGTCACAAACGCAGGGCTTGGATGACGACACGCTGCTGAAAATTCTAGACTATCTGAACCCAGAGACTGAAGAGGGCGAAGATAAGGACCTTTATGCCCAAACTGTCAAAGGACTGTAGATGGTGGGGATGTAGATCCATATTATATTGTTTTGATGAGGGGGGAATCATAATAAAGTATTTTGAAAAGTAAATACATGCAATGGAGTTTAGTCTCTTCACTAGATTTACTACAGCTCATGCTTTAATAGCCAATTTATACATTAACTTGATCTGATGTAGCTACAAGGGAGTGCCTATTGGTGGTTGTAACTGAGTGTGGCATAATATTCAATGTTTTTGATAGGATAGCTAGAACAACACTAGTTACAATAGACCACTTTATACTAGCCGTACATCAGTGCACATCCACTTGTGTTCCTCCTCGTAAATTATATTTCGTACATGTGTTCGGTAATGTGTAATGTATGAGGTTAATAAAGCATTGACTTTATTTTTTC

Function

NR:

description
secretogranin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588337.2 True 2565 mRNA 0.51 2 29880654 29884496

Neighbor

gene id symbol gene type direction distance location
LOC110507919 LOC106580690 coding downstream 19725 29854457 ~ 29860929 (-)
LOC110507921 psmd2 coding downstream 103008 29756570 ~ 29777646 (-)
LOC110507923 NA coding downstream 124567 29683759 ~ 29756087 (-)
alp3 LOC106580686 coding downstream 208176 29658317 ~ 29672478 (-)
zgc:165508 LOC106613118 coding downstream 229165 29626155 ~ 29651489 (-)
LOC110507932 kcne4 coding upstream 47131 29931627 ~ 29932989 (-)
LOC110507928 acsl3 coding upstream 52407 29936903 ~ 29972053 (-)
LOC110507931 LOC106581313 coding upstream 105664 29990160 ~ 29994173 (-)
LOC110507937 acpl2 coding upstream 709279 30593775 ~ 30621882 (-)
LOC118944677 NA coding upstream 723333 30607829 ~ 30609111 (-)
G2072310 NA non-coding downstream 215 29878527 ~ 29880439 (-)
G2072315 NA non-coding downstream 8073 29872364 ~ 29872581 (-)
G2072309 NA non-coding downstream 26875 29851375 ~ 29853779 (-)
G2072312 NA non-coding downstream 30988 29848555 ~ 29849666 (-)
G2072302 NA non-coding downstream 32192 29847162 ~ 29848462 (-)
G2072322 NA non-coding upstream 6796 29891292 ~ 29891503 (-)
G2072328 NA non-coding upstream 27967 29912463 ~ 29912666 (-)
G2072329 NA non-coding upstream 28798 29913294 ~ 29913515 (-)
G2072339 NA non-coding upstream 42353 29926849 ~ 29927346 (-)
G2072359 NA non-coding upstream 113406 29997902 ~ 29998155 (-)
G2072288 LOC100196662 other downstream 48945 29822517 ~ 29833885 (-)
G2071247 LOC106581281 other downstream 937926 28941354 ~ 28942728 (-)
G2070744 NA other downstream 1356104 28523946 ~ 28524550 (-)
G2070530 NA other downstream 1708112 28170838 ~ 28172542 (-)
G2072732 NA other upstream 511279 30395775 ~ 30396680 (-)
G2074300 NA other upstream 2143132 32027628 ~ 32027967 (-)
G2076236 NA other upstream 2994293 32878789 ~ 32880888 (-)
G2077617 NA other upstream 5231886 35116382 ~ 35154043 (-)
G2077934 NA other upstream 5550378 35434874 ~ 35435212 (-)

Expression


Co-expression Network