LOC110507928 (acsl3)


Basic Information

Item Value
gene id LOC110507928
gene name acsl3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 29936903 ~ 29972053 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964847.1
CATTACGTTTTATTATGACTGTAGCCTACTGTCTGAAAAGTTTCTCCGCCTTCTTCATCAAATTCCACTCTGTGCGCTCTGACCGGGAGTAACCTTTCATTTCCATCACAGACCGGCCCCAGCACGCGCCACCTCAACGAGTCCAATCAAAAGCCAGGGAATGCCTCCTGTGCAATAATACCATGACGACGCGCCTGTCACTTCCGAGCTGCGAGCGGCGACCAATATAAGCAGGCAGACGATGAGGGAATTCAATTGCAATTCGTGTAATTGAATACCCAATTCATGAAATAAAAGAACGCATTCCCTTTCGTCGCTGATACACCAGGTGTTTTATCCAAGGAGTAAGGTGTTGCTGCCATTGTCATCAGATAAACCCACAAGGGCAGAAGAAGAAGGAGCAGGAAATGAATACCTTGCCCTGTCAGTGGCAGCAGGATTCATTCTCTCTCCAACCATTCACACCTTAGACTTAGAGGAGCTGTCCTGGTGATAAACTACCTGCTCAGAGCATAAACCCTGGGACCCTACCTTGGGTTCTAAAGTGAAATAACTCAtcccccccgcacacacacacccagtcaggATGAAGCTGAAAGAGGACCTGAAcccagtgctgctgctgctcttcCAGGTGACGGTGTGGCTGTACTCTGTCCTAGccttcctcccctcctacctcttcaGCTCTGTGTCAGAATCAGATGCAGGCCTTGGCTCAGAACAGGAGCGGGCTCAGAGACTCAAGGCCCAGTCTGTGACGGGTCGCCCCGCGGGGCCCTACAGGGCCATGGGCGCCACCAAGAGGCTGGTGTCGTCCCTGCACCCCGGGGTAGACACACTGGATAAGGTGTTTGAGGATGCATCCAGAAGGTTCCCTGACAGAGACTGCTTGGGCACCAGAGAGGTGGTcatggaggaggatgagagacagAACAACGGAAAGGTCTTCAAGAAGGTGATCTTGGGGCAGTACCGCTGGCTGTCCTATGCTGAGACCCACAAGGCAGCAGCACGCTTTGGCAGTGGTCTTGCAGCGATGGGCCAGAGAGCCCACAACAACATTGCCATCTTCTGTGAGACCAGGGCCGAGTGGGTCATAGCTGCACAGGCGTGCTTCATGCAAAACTTCCCATTGGTCACTCTGTACTCTACCCTGGGGGGTCCGGCCATTACTCACGGTCTGAACGAGACAGAGGTTAGTCACATCATCACCAGCAGAGAGCTACTGGAgaccagactcaagTTCATCCTACTGGAGGTGCCCAGACTGCAGCACATCATTGTGGTGGATGACACGCCCACCAAGTGGCCTGGTTACCCACGAGGCATCAGTGTCCACAACATGGCTACCGTTCAGGAGCTGGGGACCAATCTTGAGAATGtgtctcgTGGGCGTAAACAGCCCATGCCCTCTGACATCGCTGTCATCATGTACACCAGCGGCTCCACTGGCGTACCCAAGGGCGTCATGATCTCCCATAGCAACATCATTGCTGGCATCACTGGCATGGCAGAAAGGATACCCAACCTGGGTGAGAATGACACCTACATCGGGTACCTCCCCCTGGCCCATGTGTTGGAGCTGAGTGCAGAGCTGGTGTGTGTAGCTCATGGCTGCAGGATCGGCTACTCCTCCCCCCAGACGCTAGCGGACCAGTCAACAAAGATAAAAAAAGGCAGCAAAGGAGACACCAGTGTTCTGCAGCCTACTCTAATGGCAGCTGTGCCGGAGATTATGGATCGTATCTATAAGAATGTGATGACCAAGGTGGAGGAGATGAGCAGTGCTCAGAGGACTCTGTTCACTCTGGCCTACAACTACAAGCTGGAGCAGCTCTCCCAAGGACGCAGCACGCCACTGTGTGACAACCTGGTGTTTAAGAAGGTTCGGTCCCTTTTGGGGGGGAAGACCAGGGTGCTGCTGTCGGGCGGGGCACCCCTCTCTGCCGCCACCCAGCGCTTCATGAACGTGTGCTTCTGTTGCCCCGTGGGCCAGGGCTATGGCCTCACCGAGACCTGCGGCGCTGGCACCATCAGCGAGATGTGGGACTACAGCACAGGGCGAGTTGGAGGACCGCTCATTTGTTCTGAAATCAAGCTCAAGGATTGGGTGGAGGGTGGCTACCACAGCACAGACACACCCAACCCACAAGGTGAGATCCTGATTGGCGGGCCCAACGTAACCATGGGTTACTACAAGAATGAGGCCAAGAACCAGGACTTCTTTGTGGACGACAACGGCCAGCGCTGGTTCTGTACGGGAGACATAGGAGAGGTCCATCCTGATGGATGCCTCAAGATCATTGATCGTAAGAAGGACCTGGTTAAGCTCCAGGCAGGAGAGTATGTGTCTCTGGGGAAGGTGGAGGCCATGCTGAAGAGCTGCCCCCTTATAGACAACATCTGTGCCTACgccaacagTGAAGAGATGTACGTGATTGGCTTTGTGGTGCCCAATCAGAAGCATCTGCTGTCGCTAGCGGAGCAGTATTGTATCCGGGGCTCGTGGGAGGAGCTGTGTAACAATGCTGCCATGGAGGGGGTGGTCCTGCAGGTCATCACTGAAGCTGCCCTATCAGCCCAGCTGGAGCGGTTTGAGATCCCCCGTAAGATCCGTCTGAGCCCCGACCCCTGGACCCCCGAGACGGGCCTGGTGACCGACGCCTTCAAGCTCAAACGCCAGCAGCTGAAGAGTAAGTACCAGGACGACATCGAGAGAATGTACGGCGGGAAgtaggaccagaccagaccagaaccactCCATGCACAGATCCAGCATCTGCCTCAAGCCTCCAAGCTTTTTGCTCCATCCTCCTATCCCCACCAGACCCCCATCCCGGACGAGCCCCCAGAAGCACTCAATTTACTTGAATCTACTTTGTTCTAATGAGACCAaaaaagatagagggagagaaatagatagagaaacagattgagaaagatagagggagagaaacagatagagaaacagattgagaaagatagagggagagaaatagatagagaaaca
>XM_036964846.1
ACATTACGTTTTATTATGACTGTAGCCTACTGTCTGAAAAGTTTCTCCGCCTTCTTCATCAAATTCCACTCTGTGCGCTCTGACCGGGAGTAACCTTTCATTTCCATCACAGACCGGCCCCAGCACGCGCCACCTCAACGAGTCCAATCAAAAGCCAGGGAATGCCTCCTGTGCAATAATACCATGACGACGCGCCTGTCACTTCCGAGCTGCGAGCGGCGACCAATATAAGCAGGCAGACGATGAGGGAATTCAATTGCAATTCGTGTAATTGAATACCCAATTCATGAAATAAAAGAACGCATTCCCTTTCGTCGCTGATACACCAGGTGTTTTATCCAAGGAGTAAGGTGTTGCTGCCATTGTCATCAGATAAACCCACAAGGGCAGAAGAAGAAGGAGCAGGAAATGAATACCTTGCCCTGTCAGTGGCAGCAGGATTCATTCTCTCTCCAACCATTCACACCTTAGACTTAGAGGAGCTGTCCTGGTGATAAACTACCTGCTCAGAGCATAAACCCTGGGACCCTACCTTGGGTTCTAAAGTGAAATAACTCAtcccccccgcacacacacacccagtcaggATGAAGCTGAAAGAGGACCTGAAcccagtgctgctgctgctcttcCAGGTGACGGTGTGGCTGTACTCTGTCCTAGccttcctcccctcctacctcttcaGCTCTGTGTCAGAATCAGATGCAGGCCTTGGCTCAGAACAGGAGCGGGCTCAGAGACTCAAGGCCCAGTCTGTGACGGGTCGCCCCGCGGGGCCCTACAGGGCCATGGGCGCCACCAAGAGGCTGGTGTCGTCCCTGCACCCCGGGGTAGACACACTGGATAAGGTGTTTGAGGATGCATCCAGAAGGTTCCCTGACAGAGACTGCTTGGGCACCAGAGAGGTGGTcatggaggaggatgagagacagAACAACGGAAAGGTCTTCAAGAAGGTGATCTTGGGGCAGTACCGCTGGCTGTCCTATGCTGAGACCCACAAGGCAGCAGCACGCTTTGGCAGTGGTCTTGCAGCGATGGGCCAGAGAGCCCACAACAACATTGCCATCTTCTGTGAGACCAGGGCCGAGTGGGTCATAGCTGCACAGGCGTGCTTCATGCAAAACTTCCCATTGGTCACTCTGTACTCTACCCTGGGGGGTCCGGCCATTACTCACGGTCTGAACGAGACAGAGGTTAGTCACATCATCACCAGCAGAGAGCTACTGGAgaccagactcaagTTCATCCTACTGGAGGTGCCCAGACTGCAGCACATCATTGTGGTGGATGACACGCCCACCAAGTGGCCTGGTTACCCACGAGGCATCAGTGTCCACAACATGGCTACCGTTCAGGAGCTGGGGACCAATCTTGAGAATGGTAaacacacagtgtctcgTGGGCGTAAACAGCCCATGCCCTCTGACATCGCTGTCATCATGTACACCAGCGGCTCCACTGGCGTACCCAAGGGCGTCATGATCTCCCATAGCAACATCATTGCTGGCATCACTGGCATGGCAGAAAGGATACCCAACCTGGGTGAGAATGACACCTACATCGGGTACCTCCCCCTGGCCCATGTGTTGGAGCTGAGTGCAGAGCTGGTGTGTGTAGCTCATGGCTGCAGGATCGGCTACTCCTCCCCCCAGACGCTAGCGGACCAGTCAACAAAGATAAAAAAAGGCAGCAAAGGAGACACCAGTGTTCTGCAGCCTACTCTAATGGCAGCTGTGCCGGAGATTATGGATCGTATCTATAAGAATGTGATGACCAAGGTGGAGGAGATGAGCAGTGCTCAGAGGACTCTGTTCACTCTGGCCTACAACTACAAGCTGGAGCAGCTCTCCCAAGGACGCAGCACGCCACTGTGTGACAACCTGGTGTTTAAGAAGGTTCGGTCCCTTTTGGGGGGGAAGACCAGGGTGCTGCTGTCGGGCGGGGCACCCCTCTCTGCCGCCACCCAGCGCTTCATGAACGTGTGCTTCTGTTGCCCCGTGGGCCAGGGCTATGGCCTCACCGAGACCTGCGGCGCTGGCACCATCAGCGAGATGTGGGACTACAGCACAGGGCGAGTTGGAGGACCGCTCATTTGTTCTGAAATCAAGCTCAAGGATTGGGTGGAGGGTGGCTACCACAGCACAGACACACCCAACCCACAAGGTGAGATCCTGATTGGCGGGCCCAACGTAACCATGGGTTACTACAAGAATGAGGCCAAGAACCAGGACTTCTTTGTGGACGACAACGGCCAGCGCTGGTTCTGTACGGGAGACATAGGAGAGGTCCATCCTGATGGATGCCTCAAGATCATTGATCGTAAGAAGGACCTGGTTAAGCTCCAGGCAGGAGAGTATGTGTCTCTGGGGAAGGTGGAGGCCATGCTGAAGAGCTGCCCCCTTATAGACAACATCTGTGCCTACgccaacagTGAAGAGATGTACGTGATTGGCTTTGTGGTGCCCAATCAGAAGCATCTGCTGTCGCTAGCGGAGCAGTATTGTATCCGGGGCTCGTGGGAGGAGCTGTGTAACAATGCTGCCATGGAGGGGGTGGTCCTGCAGGTCATCACTGAAGCTGCCCTATCAGCCCAGCTGGAGCGGTTTGAGATCCCCCGTAAGATCCGTCTGAGCCCCGACCCCTGGACCCCCGAGACGGGCCTGGTGACCGACGCCTTCAAGCTCAAACGCCAGCAGCTGAAGAGTAAGTACCAGGACGACATCGAGAGAATGTACGGCGGGAAgtaggaccagaccagaccagaaccactCCATGCACAGATCCAGCATCTGCCTCAAGCCTCCAAGCTTTTTGCTCCATCCTCCTATCCCCACCAGACCCCCATCCCGGACGAGCCCCCAGAAGCACTCAATTTACTTGAATCTACTTTGTTCTAATGAGACCAaaaaagatagagggagagaaatagatagagaaacagattgagaaagatagagggagagaaacagatagagaaacagattgagaaagatagagggagagaaatagatagagaaaca

Function

symbol description
acsl3 Enables long-chain fatty acid-CoA ligase activity; protein domain specific binding activity; and protein kinase binding activity. Involved in several processes, including positive regulation of phosphatidylcholine biosynthetic process; positive regulation of transport; and very-low-density lipoprotein particle assembly. Located in several cellular components, including Golgi apparatus; lipid droplet; and perinuclear region of cytoplasm. Implicated in asthma; breast cancer; and prostate cancer. Biomarker of breast cancer; lung cancer; and prostate cancer.

NR:

description
long-chain-fatty-acid--CoA ligase 3-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01897 ACSL, fadD; long-chain acyl-CoA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964847.1 False 3013 mRNA 0.54 15 29936903 29972052
XM_036964846.1 True 3026 mRNA 0.54 15 29936903 29972053

Neighbor

gene id symbol gene type direction distance location
LOC110507932 kcne4 coding downstream 3914 29931627 ~ 29932989 (-)
LOC110507916 LOC106591944 coding downstream 52407 29880654 ~ 29884496 (-)
LOC110507919 LOC106580690 coding downstream 75974 29854457 ~ 29860929 (-)
LOC110507921 psmd2 coding downstream 159257 29756570 ~ 29777646 (-)
LOC110507923 NA coding downstream 180816 29683759 ~ 29756087 (-)
LOC110507931 LOC106581313 coding upstream 18107 29990160 ~ 29994173 (-)
LOC110507937 acpl2 coding upstream 621722 30593775 ~ 30621882 (-)
LOC118944677 NA coding upstream 635776 30607829 ~ 30609111 (-)
LOC110507935 LOC106581306 coding upstream 711401 30683454 ~ 30724465 (-)
LOC118944654 LOC106613133 coding upstream 767727 30739780 ~ 30743661 (-)
G2072339 NA non-coding downstream 9557 29926849 ~ 29927346 (-)
G2072329 NA non-coding downstream 23388 29913294 ~ 29913515 (-)
G2072328 NA non-coding downstream 24237 29912463 ~ 29912666 (-)
G2072322 NA non-coding downstream 45400 29891292 ~ 29891503 (-)
G2072310 NA non-coding downstream 56464 29878527 ~ 29880439 (-)
G2072359 NA non-coding upstream 25849 29997902 ~ 29998155 (-)
G2072307 LOC107380793 non-coding upstream 69695 30041748 ~ 30045631 (-)
G2072384 NA non-coding upstream 77494 30049547 ~ 30049775 (-)
G2072386 NA non-coding upstream 80670 30052723 ~ 30053256 (-)
G2072397 NA non-coding upstream 93932 30065985 ~ 30066219 (-)
G2072288 LOC100196662 other downstream 105194 29822517 ~ 29833885 (-)
zgc:165508 LOC106613118 other downstream 285436 29626155 ~ 29651489 (-)
G2071247 LOC106581281 other downstream 994175 28941354 ~ 28942728 (-)
G2070744 NA other downstream 1412353 28523946 ~ 28524550 (-)
G2070530 NA other downstream 1764361 28170838 ~ 28172542 (-)
G2072732 NA other upstream 423722 30395775 ~ 30396680 (-)
G2074300 NA other upstream 2055575 32027628 ~ 32027967 (-)
G2076236 NA other upstream 2906736 32878789 ~ 32880888 (-)
G2077617 NA other upstream 5144329 35116382 ~ 35154043 (-)
G2077934 NA other upstream 5462821 35434874 ~ 35435212 (-)

Expression


Co-expression Network