LOC110507935 (LOC106581306)


Basic Information

Item Value
gene id LOC110507935
gene name LOC106581306
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 30683454 ~ 30724465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588357.2
TTTCCTGTCGTAGCTGGGAACTGACTGAGGCAAGACTGTTTTCCTGTTGTGGCGTCACTTACTGACATTTCTATTCTATTTCTCGctttctgtatttctctctcgaTCCACTATTCTGGCCACAGTTGGACAAGGCTTTTAggatttcctctctcctctagtGTTTGCGTACACATTGCCTTGAGTCGTGAGAAATCTAATTGCTGACACCAGCTTGACCTTGGATATCGCATGttGCGAGTTTCCTCTGACAGTGGACTGAGTGTCTCTGTGAGCGTCTCTCAACCTGGGACGACTGCTCTTCTGGCTACTCCTCTGACAGTGGACTGAGTGTCTCTGTGAGCGTCTCTCAACCTGGGACGACTGCTCTTCTGGCTACAGCGTCCATGAGGTAACGGCGGGAAGCCCCATACTACCCTcgctccatccccctctccctccatccccctctgcaGCGATGGGTCAGAAGATCTCAGGCAGCATCAAGTCAGTGGACGCACGGGGTGAGCCTTCATACCGGCCGGTCCGCCGTGAGCTGCGGGGTCCAGACTTCTGCCGGCCTCCTCGTTTGGACCTGCTTCTGGACATGCCCCCTGCGACCTCTGACCTGCAGCTCCATCACGCCTGGAACCCCGAAGACCGCTCGCTTAATGTCTTTGTCAAGGAGGACGACAAGCTGACCTTCCACCGCCACCCGGTGGCCCAGAGCACCGACTGCATCCGCGGCCAGGTGGGCTACACACGGGGGCTCCATGTCTGGCGGATCCACTGGCCGGTGAGACAACGAGGAACACACGCTGTCGTAGGGGTGGGCACGGCTGACGCTCTTCTACACTCTGTGGGTTACACGGCCCTGGTGGGTTCGGACTGTGAGTCGTGGGGTTGGGACTTGGGCCGGAACAGACTCTACCATGACAGTAAGAACCGTCCGGCCTCCACCTCGGCACCAACATACCCGTGTTTCCTGGAGGCAGACGAGTCGTTTGTTCTGCCAGATGCCCTGCTGGTGGTGCTGGACATGGACGAGGGCTCACTCAGCTTCATGGTGGACGGCCAGTACCTGGGCGTGGCCTTCAGAGGGTTAAAGGGCAAGAGGCTGTACCCCATCGTCAGCGCCGTGTGGGGACACTGTGAGGTCTCCATCCGCTACGTCAATGGACTGGATCCGGAGCCCCTCCCCCTGATGGACCTGTGCAGGCGAGTGGCCAGGCTGGCTCTGGGGCGGGACCGACTCAACCAGATAGACACCCTCCCTCTGCCAGAGACCCTCAAGAACTACCTCCAGTACCAGTGACCCCACACACTCACCAGGACAACGAACGACTGACTGCTTGACGGCAGCTACATTTCACTACAGTCAACTCCCAAAAATGTAACCCTGACCCATTGGACATCTACTCAGGATAATTATGATGGTCTGGAGGAAGCCTATGAAGGAGTTCCGAGTTTCTTTTTAGgatttgtctgtttttttttttttttttttttttatttgctcACTGCTGTGATGGttgatggacagagggaggattAACGAAAGGAGGGGGTGGGCTTGAGACTGGACTGTAGCAGAAGTGTTGGGCTATGATGCTGACTTCTCATTGGGTATATGGGTCTGTAGTTCTTCTAGAATATGTGCCTGGAGGAACAGGGCGTTTGGGGATGATGCATATAGACATCATACATAGTTACTGTACATCTATACAGATTCTCTGGAAGGCTCTCGGAACATCTAGAGATTTATATTTAGACCCTATAGCAGGCTCCACTGAGACTCACCAGCCCCTAGCCACAGGGAGTTAGATATTTATATTTAGACCCTATAGCAGGCTCCACTGAGACTCACCAGCCCCTAGCCACAGGGAGTTAGATATTTATATTTAGACCCTATAGCAGGCTCCACTGAGACTCACCAGCCCCTAGCCACAGGGAGTTAGAGG
>XM_021588356.2
ACCATGTAAGGTACTTGGACTAAGGAGTAACGTTAGGCTCCTTTAGTCCAATATTGGGCAATGTAGGCCTATGCTACTAGTAACATTTAGGCTAGTTGCATAGAAAAAGTCATTTCAAATTTAGACTAGGATACTTCTTCACTCCCCGAGGTCAGTGTTGTGAGCAAAACTAGCTAGTCGAATGATTATATCCTCGCCACGAAAAATGGGCTGACTTTAGGACTGCGGAAAGAAATGGCTCTGCTGTTGCCCTAGCCATCACCTATTGCGGATCCTATCCCTCGAGCGACTTGGCCAATCAGTGCGTATCAGCGACACATGAACGGTGATTTCCACGGAATGGCTCGCGGAACAAAGAAGCCGCCCGTCGCGAATTCCCTTATCGGTAGATAGAGAGAATTCGCCGATAAAACAGCACAGAAGAGTAAAGTTAGTACGGCTTGGTGAAATAAAATGATTATATTCGACGCATAATAGAAAAAAAAGTCCAACGTTTTTTTATGCTCAAGGAGAGAACTTGGCGTCGTGAGGGCTTTTTGTCGGTCGCGAGGCGAGGCTTTTGGCTACATTGGAACttGCGAGTTTCCTCTGACAGTGGACTGAGTGTCTCTGTGAGCGTCTCTCAACCTGGGACGACTGCTCTTCTGGCTACTCCTCTGACAGTGGACTGAGTGTCTCTGTGAGCGTCTCTCAACCTGGGACGACTGCTCTTCTGGCTACAGCGTCCATGAGGTAACGGCGGGAAGCCCCATACTACCCTcgctccatccccctctccctccatccccctctgcaGCGATGGGTCAGAAGATCTCAGGCAGCATCAAGTCAGTGGACGCACGGGGTGAGCCTTCATACCGGCCGGTCCGCCGTGAGCTGCGGGGTCCAGACTTCTGCCGGCCTCCTCGTTTGGACCTGCTTCTGGACATGCCCCCTGCGACCTCTGACCTGCAGCTCCATCACGCCTGGAACCCCGAAGACCGCTCGCTTAATGTCTTTGTCAAGGAGGACGACAAGCTGACCTTCCACCGCCACCCGGTGGCCCAGAGCACCGACTGCATCCGCGGCCAGGTGGGCTACACACGGGGGCTCCATGTCTGGCGGATCCACTGGCCGGTGAGACAACGAGGAACACACGCTGTCGTAGGGGTGGGCACGGCTGACGCTCTTCTACACTCTGTGGGTTACACGGCCCTGGTGGGTTCGGACTGTGAGTCGTGGGGTTGGGACTTGGGCCGGAACAGACTCTACCATGACAGTAAGAACCGTCCGGCCTCCACCTCGGCACCAACATACCCGTGTTTCCTGGAGGCAGACGAGTCGTTTGTTCTGCCAGATGCCCTGCTGGTGGTGCTGGACATGGACGAGGGCTCACTCAGCTTCATGGTGGACGGCCAGTACCTGGGCGTGGCCTTCAGAGGGTTAAAGGGCAAGAGGCTGTACCCCATCGTCAGCGCCGTGTGGGGACACTGTGAGGTCTCCATCCGCTACGTCAATGGACTGGATCCGGAGCCCCTCCCCCTGATGGACCTGTGCAGGCGAGTGGCCAGGCTGGCTCTGGGGCGGGACCGACTCAACCAGATAGACACCCTCCCTCTGCCAGAGACCCTCAAGAACTACCTCCAGTACCAGTGACCCCACACACTCACCAGGACAACGAACGACTGACTGCTTGACGGCAGCTACATTTCACTACAGTCAACTCCCAAAAATGTAACCCTGACCCATTGGACATCTACTCAGGATAATTATGATGGTCTGGAGGAAGCCTATGAAGGAGTTCCGAGTTTCTTTTTAGgatttgtctgtttttttttttttttttttttttatttgctcACTGCTGTGATGGttgatggacagagggaggattAACGAAAGGAGGGGGTGGGCTTGAGACTGGACTGTAGCAGAAGTGTTGGGCTATGATGCTGACTTCTCATTGGGTATATGGGTCTGTAGTTCTTCTAGAATATGTGCCTGGAGGAACAGGGCGTTTGGGGATGATGCATATAGACATCATACATAGTTACTGTACATCTATACAGATTCTCTGGAAGGCTCTCGGAACATCTAGAGATTTATATTTAGACCCTATAGCAGGCTCCACTGAGACTCACCAGCCCCTAGCCACAGGGAGTTAGATATTTATATTTAGACCCTATAGCAGGCTCCACTGAGACTCACCAGCCCCTAGCCACAGGGAGTTAGATATTTATATTTAGACCCTATAGCAGGCTCCACTGAGACTCACCAGCCCCTAGCCACAGGGAGTTAGAGG
>XM_036965431.1
ACCATGTAAGGTACTTGGACTAAGGAGTAACGTTAGGCTCCTTTAGTCCAATATTGGGCAATGTAGGCCTATGCTACTAGTAACATTTAGGCTAGTTGCATAGAAAAAGTCATTTCAAATTTAGACTAGGATACTTCTTCACTCCCCGAGGTCAGTGTTGTGAGCAAAACTAGCTAGTCGAATGATTATATCCTCGCCACGAAAAATGGGCTGACTTTAGGACTGCGGAAAGAAATGGCTCTGCTGTTGCCCTAGCCATCACCTATTGCGGATCCTATCCCTCGAGCGACTTGGCCAATCAGTGCGTATCAGCGACACATGAACGGTGATTTCCACGGAATGGCTCGCGGAACAAAGAAGCCGCCCGTCGCGAATTCCCTTATCGGTAGATAGAGAGAATTCGCCGATAAAACAGCACAGAAGAGTAAAGTTAGTACGGCTTGGTGAAATAAAATGATTATATTCGACGCATAATAGAAAAAAAAGTCCAACGTTTTTTTATGCTCAAGGAGAGAACTTGGCGTCGTGAGGGCTTTTTGTCGGTCGCGAGGCGAGGCTTTTGGCTACATTGGAACGAAGTAGGCAGGCCACAGTAAGGTGATTGACCTGTGACCTTTGGACTTGGTGATTTGGTTGTTCGCTGCAGACTCCAGATCTCAGATGAATTAACAGttGCGAGTTTCCTCTGACAGTGGACTGAGTGTCTCTGTGAGCGTCTCTCAACCTGGGACGACTGCTCTTCTGGCTACTCCTCTGACAGTGGACTGAGTGTCTCTGTGAGCGTCTCTCAACCTGGGACGACTGCTCTTCTGGCTACAGCGTCCATGAGGTAACGGCGGGAAGCCCCATACTACCCTcgctccatccccctctccctccatccccctctgcaGCGATGGGTCAGAAGATCTCAGGCAGCATCAAGTCAGTGGACGCACGGGGTGAGCCTTCATACCGGCCGGTCCGCCGTGAGCTGCGGGGTCCAGACTTCTGCCGGCCTCCTCGTTTGGACCTGCTTCTGGACATGCCCCCTGCGACCTCTGACCTGCAGCTCCATCACGCCTGGAACCCCGAAGACCGCTCGCTTAATGTCTTTGTCAAGGAGGACGACAAGCTGACCTTCCACCGCCACCCGGTGGCCCAGAGCACCGACTGCATCCGCGGCCAGGTGGGCTACACACGGGGGCTCCATGTCTGGCGGATCCACTGGCCGGTGAGACAACGAGGAACACACGCTGTCGTAGGGGTGGGCACGGCTGACGCTCTTCTACACTCTGTGGGTTACACGGCCCTGGTGGGTTCGGACTGTGAGTCGTGGGGTTGGGACTTGGGCCGGAACAGACTCTACCATGACAGTAAGAACCGTCCGGCCTCCACCTCGGCACCAACATACCCGTGTTTCCTGGAGGCAGACGAGTCGTTTGTTCTGCCAGATGCCCTGCTGGTGGTGCTGGACATGGACGAGGGCTCACTCAGCTTCATGGTGGACGGCCAGTACCTGGGCGTGGCCTTCAGAGGGTTAAAGGGCAAGAGGCTGTACCCCATCGTCAGCGCCGTGTGGGGACACTGTGAGGTCTCCATCCGCTACGTCAATGGACTGGATCCGGAGCCCCTCCCCCTGATGGACCTGTGCAGGCGAGTGGCCAGGCTGGCTCTGGGGCGGGACCGACTCAACCAGATAGACACCCTCCCTCTGCCAGAGACCCTCAAGAACTACCTCCAGTACCAGTGACCCCACACACTCACCAGGACAACGAACGACTGACTGCTTGACGGCAGCTACATTTCACTACAGTCAACTCCCAAAAATGTAACCCTGACCCATTGGACATCTACTCAGGATAATTATGATGGTCTGGAGGAAGCCTATGAAGGAGTTCCGAGTTTCTTTTTAGgatttgtctgtttttttttttttttttttttttatttgctcACTGCTGTGATGGttgatggacagagggaggattAACGAAAGGAGGGGGTGGGCTTGAGACTGGACTGTAGCAGAAGTGTTGGGCTATGATGCTGACTTCTCATTGGGTATATGGGTCTGTAGTTCTTCTAGAATATGTGCCTGGAGGAACAGGGCGTTTGGGGATGATGCATATAGACATCATACATAGTTACTGTACATCTATACAGATTCTCTGGAAGGCTCTCGGAACATCTAGAGATTTATATTTAGACCCTATAGCAGGCTCCACTGAGACTCACCAGCCCCTAGCCACAGGGAGTTAGATATTTATATTTAGACCCTATAGCAGGCTCCACTGAGACTCACCAGCCCCTAGCCACAGGGAGTTAGATATTTATATTTAGACCCTATAGCAGGCTCCACTGAGACTCACCAGCCCCTAGCCACAGGGAGTTAGAGG

Function

NR:

description
SPRY domain-containing SOCS box protein 4-like

GO: NA

KEGG:

id description
K10343 SPSB1_4, SSB1, SSB4; SPRY domain-containing SOCS box protein 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588357.2 False 1940 mRNA 0.54 3 30683454 30700440
XM_021588356.2 False 2281 mRNA 0.53 3 30683454 30724465
XM_036965431.1 True 2378 mRNA 0.53 4 30683454 30724465

Neighbor

gene id symbol gene type direction distance location
LOC110507937 acpl2 coding downstream 61572 30593775 ~ 30621882 (-)
LOC118944677 NA coding downstream 74343 30607829 ~ 30609111 (-)
LOC110507931 LOC106581313 coding downstream 689281 29990160 ~ 29994173 (-)
LOC110507928 acsl3 coding downstream 711401 29936903 ~ 29972053 (-)
LOC110507932 kcne4 coding downstream 750465 29931627 ~ 29932989 (-)
LOC118944654 LOC106613133 coding upstream 15315 30739780 ~ 30743661 (-)
LOC110507154 clstn2 coding upstream 26610 30751075 ~ 31200797 (-)
LOC110507962 LOC106613113 coding upstream 607811 31332276 ~ 31358483 (-)
LOC110507961 LOC106581358 coding upstream 907082 31631547 ~ 31633359 (-)
LOC110507960 LOC106581357 coding upstream 911959 31636424 ~ 31638259 (-)
G2073164 NA non-coding downstream 111471 30571416 ~ 30571983 (-)
G2073160 NA non-coding downstream 117255 30565662 ~ 30566199 (-)
G2072801 NA non-coding downstream 128720 30525394 ~ 30554734 (-)
G2072656 NA non-coding downstream 318019 30365213 ~ 30365435 (-)
G2073272 NA non-coding upstream 37757 30762222 ~ 30765491 (-)
G2073296 NA non-coding upstream 86012 30810477 ~ 30811288 (-)
G2073303 NA non-coding upstream 97202 30821667 ~ 30825810 (-)
G2073304 NA non-coding upstream 98746 30823211 ~ 30823552 (-)
G2072732 NA other downstream 286774 30395775 ~ 30396680 (-)
G2072288 LOC100196662 other downstream 851745 29822517 ~ 29833885 (-)
zgc:165508 LOC106613118 other downstream 1031987 29626155 ~ 29651489 (-)
G2071247 LOC106581281 other downstream 1740726 28941354 ~ 28942728 (-)
G2070744 NA other downstream 2158904 28523946 ~ 28524550 (-)
G2074300 NA other upstream 1303163 32027628 ~ 32027967 (-)
G2076236 NA other upstream 2154324 32878789 ~ 32880888 (-)
G2077617 NA other upstream 4391917 35116382 ~ 35154043 (-)
G2077934 NA other upstream 4710409 35434874 ~ 35435212 (-)
G2077936 NA other upstream 4711129 35435594 ~ 35436257 (-)

Expression


Co-expression Network