LOC110507154 (clstn2)


Basic Information

Item Value
gene id LOC110507154
gene name clstn2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 30751075 ~ 31200797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965819.1
TCCAACAACCATTGAACGAGCTCTGTTAACTATACCGCGCAGCTTCACCGTTTCTTCACGGAAGaagcctccctctctgcctcgctGTGTGTATTATTACACTCTTTGCTCGCTATCTTTAGTCGGACATATCATTAGTGAACAGTTTTACGGCTTGAAGGAGAGAAAACGTTGGGACAAGCTGAATAGAAGGAGCAGGCGGAaaggatcgagagagagagagagagagataaagaggtcACCGTGCCCTGTCTGCATTTCGCTCTCACCACGCCATGAAGATGCAGAGAATATCCGAGGTGGTGCTGCTGATGGCCGGGGTTGCAGTGGGGCTGTGTGCCTGTCACACAGTGAAAGTGAACAAACACAAGCCATGGATTGAGACGTCATACCATGGGGTAATCACAGAGAACATGGACATCGTCCTACTGGACCCTCCCCTGGTGGCCCTGGACAAAGACGCCCCCGTGCCCTACGCAGggGAGATCTGTGCGTTTAAGATCCATGGTCTGGAGGCTCCGTTCGAGGCAGTGGTACTGAATGGGACATCTGGTGAGGGCCAGCTGAGAGCCAGGGGCCCGGTGGACTGTGAGCTGCAAAAGGAGTACACCTTTATCATCCAGGCCCATGACTGTGGAGCAGGACCTGGGGGCACCGGGGGGAAGAAGTCACACAAGGCAGTGGTACACATCCAGGTGAATGATGTGAATGAGTTCTCTCCAGTGTTCCGGGAGGCCCAGTACCACGCGGCGGTGACAGAGGAGAAGATCTATGACAACATCCTGCAGGTGGAGGCTACAGACCAGGACTGTTCTCCTCAGTACAGCCAGATCTGTAACTACCAGATCACCACCTCCAACACACCCTTCGCCATCGACCGCAATGGTAACATCAGGAACACAGAGAAGCTGAGCTTTGATAAGCAGCAACAGTATGAGGTCCTGGTCACAGCCTTCGACTGTGGACAGAAGAGATCCACAGAGAGCGTGGCGGTACACATTGACGTTAAACCTGTCTGCAAACCTGGCTGGCAAGGCTGGAACAAAAGAGTGGACTATGAGCCAGGCACAGGCAGCAAGCAGTTGTTTCCCAAGATGCATCTGGAGACGTGTGGAGGGCCTCTCTCCTCAGTGAGGACCATGGTGGAGCTACAGACCAGCCATATTGGGAagggctgcgaccgggagacctaCTCTGAGAAGTCTCTGCAGAAACTCTGTGGGGCCTCGTCGGGCAGCACAGACCTTCTCCCTGCTCCCAGCGTCTCCACCAATTGGACTGCGTCCCTTGTGACAGACAGTGGGCGGGACAGCGACCTCATCTTCCGGTTTGACGGGCGGCATGCAGCAAAGATTCCTGACCAGATGGTACCACAGAACCTGACGGATCAGTTCACAATCGCCACGTGGATGAAGCATGGACCCACTCCTGGACTGAGGGCGGAGAAAGAGACCCTGCTCTGCAACTCTGATAAGACAgAGATGAACAGACACCACTACTCCCTTTACGTCCATAACTGTCGTCTGGTCTTCCTGCTCCGGAGAGACTTCACCCAGGTGGACACCTTCAGACCTGCAGAGTTCCACTGGAAACTGGAGCAGATCTGTGATAAGGAGTGGCACTATTACGTCATTAACGTGGAGTTTCCTGTGGTGACACTCTACGTGGACGGAGTGACCTACGACCCTTACCTGGTGACAGACGATTGGCCGATCCACCCATCTCAGATTGACGTGCAGCTTACTTTGGGTGCCTGCTGGCaagGTGGTGAGGTGACGATGCCGCGGTTCACTCAGTACTTCCGGGGCAGTCTGTCAGGGCTGACCATCAGGCCAGGGAAGATAGAGAGCCAGAAGGTAATCTCCTGTCTACAGGCCTGTAAGGAAGGACTGGACATCAACTCACTGGAGAGCCTGGGCAAGGGCATCAAGttCCACTTCAACCCAGCCCAGTCGATCCTGGTGATGGAGGGCGAGGATCTGGAGAACATGAACGCTGCTCTGAGGAAGGTCTCCTACATCAACTCCCGCCAGTTTCCCACACCGGGCATCAGACACCTGCACATCTCAACCTCAGTACAGTGTTTTGGGGAGGACACGTGTATCTCCATCCCGGACATCGATGCAGTGGTGATGGTGCTGCAGCCCAGTGAACCCAGGATCACCATAGCTGGGGTGGACAGACTGACCAGGCCAGCAGCTGACCTCAGAGGACCAGCCGGACTCACTCTgttccaggacctccacatcatcAGTACTGTCACCAAGGGAGACACAGCCTCACACCATACAGcgggCAGGCTGGGGGTCCAGGAGGAGATCATCCATAACCTGGACTACTGTGACATCCTGGTGCTGGGGGAGGAGCTGAGGCCAGAGCAGGAGAGTCTCCAGCTGCAGCGTAGCACCCTGCTGGGGAAACACCTGGACACCACCAACTCCACCTCCGGCATGTCTATATACGGCGTGGACTCCATGTCCAACTATGAGCAGGTGATCAGACAGGTGCATTACCACAACTGGCACCCCACCCAGACCCCAGACAGGAAGTTCCGTCTCACCTGCTCCGAGCTCAACGGACGCTACACCAGCAATGAGTTCACCCTGGAGATCAGTGTACTCCACAAATCAGAGGCTGGGGAGCATGTCAATCAAATGGTAGCCCCGCCCCAGTACATGCAAGTGGTTCATCATCCGGCCATGGTCCACAGTCTATACCCCACACACGGTTCAGGAGTCCCCAGTGCTGCCACAGTGGTGATAGTGATCTGTATCGCCgccctggtggtggtggttgtgctaGGCATCTACCGTATTCACCTGACACACCAACAGGAGTGCAGGAGCTCAGACACAACCAAGGAGGGAGAGCTGGACTGGAACGACTCAGCGCTCAATATCACAGTCAATCCTATGGAGAGCTTCCAGGAGCCCCAGGGAGCTGAGGAAGAGgccagtgaggaggaggaggaagatgaagaggatGACATCACCAGCACAGAGTCAGACgacagcgaggaggaggaggttcAAGGAGCTCCCAGGGTACAACAGAGCAGCAAGAGGGGCCAGCTGGACTGGGACAACTCTACAATAACCTACTGAATACAATTATACATACACActgatgcacacacatacacactgatgtacatacacacacgctgAGGCATCAACATACTCACTACTATAAAATAAATTGTTCAAGTCATGAGACTACCTGAGATTTCTCTGAGTTGAGGTAACATCTTCC
>XM_036965818.1
TCCAACAACCATTGAACGAGCTCTGTTAACTATACCGCGCAGCTTCACCGTTTCTTCACGGAAGaagcctccctctctgcctcgctGTGTGTATTATTACACTCTTTGCTCGCTATCTTTAGTCGGACATATCATTAGTGAACAGTTTTACGGCTTGAAGGAGAGAAAACGTTGGGACAAGCTGAATAGAAGGAGCAGGCGGAaaggatcgagagagagagagagagagataaagaggtcACCGTGCCCTGTCTGCATTTCGCTCTCACCACGCCATGAAGATGCAGAGAATATCCGAGGTGGTGCTGCTGATGGCCGGGGTTGCAGTGGGGCTGTGTGCCTGTCACACAGTGAAAGTGAACAAACACAAGCCATGGATTGAGACGTCATACCATGGGGTAATCACAGAGAACATGGACATCGTCCTACTGGACCCTCCCCTGGTGGCCCTGGACAAAGACGCCCCCGTGCCCTACGCAGggGAGATCTGTGCGTTTAAGATCCATGGTCTGGAGGCTCCGTTCGAGGCAGTGGTACTGAATGGGACATCTGGTGAGGGCCAGCTGAGAGCCAGGGGCCCGGTGGACTGTGAGCTGCAAAAGGAGTACACCTTTATCATCCAGGCCCATGACTGTGGAGCAGGACCTGGGGGCACCGGGGGGAAGAAGTCACACAAGGCAGTGGTACACATCCAGGTGAATGATGTGAATGAGTTCTCTCCAGTGTTCCGGGAGGCCCAGTACCACGCGGCGGTGACAGAGGAGAAGATCTATGACAACATCCTGCAGGTGGAGGCTACAGACCAGGACTGTTCTCCTCAGTACAGCCAGATCTGTAACTACCAGATCACCACCTCCAACACACCCTTCGCCATCGACCGCAATGGTAACATCAGGAACACAGAGAAGCTGAGCTTTGATAAGCAGCAACAGTATGAGGTCCTGGTCACAGCCTTCGACTGTGGACAGAAGAGATCCACAGAGAGCGTGGCGGTACACATTGACGTTAAACCTGTCTGCAAACCTGGCTGGCAAGGCTGGAACAAAAGAGTGGACTATGAGCCAGGCACAGGCAGCAAGCAGTTGTTTCCCAAGATGCATCTGGAGACGTGTGGAGGGCCTCTCTCCTCAGTGAGGACCATGGTGGAGCTACAGACCAGCCATATTGGGAagggctgcgaccgggagacctaCTCTGAGAAGTCTCTGCAGAAACTCTGTGGGGCCTCGTCGGGCAGCACAGACCTTCTCCCTGCTCCCAGCGTCTCCACCAATTGGACTGCGTCCCTTGTGACAGACAGTGGGCGGGACAGCGACCTCATCTTCCGGTTTGACGGGCGGCATGCAGCAAAGATTCCTGACCAGATGGTACCACAGAACCTGACGGATCAGTTCACAATCGCCACGTGGATGAAGCATGGACCCACTCCTGGACTGAGGGCGGAGAAAGAGACCCTGCTCTGCAACTCTGATAAGACAgAGATGAACAGACACCACTACTCCCTTTACGTCCATAACTGTCGTCTGGTCTTCCTGCTCCGGAGAGACTTCACCCAGGTGGACACCTTCAGACCTGCAGAGTTCCACTGGAAACTGGAGCAGATCTGTGATAAGGAGTGGCACTATTACGTCATTAACGTGGAGTTTCCTGTGGTGACACTCTACGTGGACGGAGTGACCTACGACCCTTACCTGGTGACAGACGATTGGCCGATCCACCCATCTCAGATTGACGTGCAGCTTACTTTGGGTGCCTGCTGGCaagGTGGTGAGGTGACGATGCCGCGGTTCACTCAGTACTTCCGGGGCAGTCTGTCAGGGCTGACCATCAGGCCAGGGAAGATAGAGAGCCAGAAGGTAATCTCCTGTCTACAGGCCTGTAAGGAAGGACTGGACATCAACTCACTGGAGAGCCTGGGCAAGGGCATCAAGttCCACTTCAACCCAGCCCAGTCGATCCTGGTGATGGAGGGCGAGGATCTGGAGAACATGAACGCTGCTCTGAGGAAGGTCTCCTACATCAACTCCCGCCAGTTTCCCACACCGGGCATCAGACACCTGCACATCTCAACCTCAGTACAGTGTTTTGGGGAGGACACGTGTATCTCCATCCCGGACATCGATGCAGTGGTGATGGTGCTGCAGCCCAGTGAACCCAGGATCACCATAGCTGGGGTGGACAGACTGACCAGGCCAGCAGCTGACCTCAGAGGACCAGCCGGACTCACTCTgttccaggacctccacatcatcAGTACTGTCACCAAGGGAGACACAGCCTCACACCATACAGcgggCAGGCTGGGGGTCCAGGAGGAGATCATCCATAACCTGGACTACTGTGACATCCTGGTGCTGGGGGAGGAGCTGAGGCCAGAGCAGGAGAGTCTCCAGCTGCAGCGTAGCACCCTGCTGGGGAAACACCTGGACACCACCAACTCCACCTCCGGCATGTCTATATACGGCGTGGACTCCATGTCCAACTATGAGCAGGTGATCAGACAGGTGCATTACCACAACTGGCACCCCACCCAGACCCCAGACAGGAAGTTCCGTCTCACCTGCTCCGAGCTCAACGGACGCTACACCAGCAATGAGTTCACCCTGGAGATCAGTGTACTCCACAAATCAGAGGCTGGGGAGCATGTCAATCAAATGGTAGCCCCGCCCCAGTACATGCAAGTGGTTCATCATCCGGCCATGGTCCACAGTCTATACCCCACACACGGTTCAGGTAAGACTGTAGAATCATCAGTCTATACCCCACACACAGCTCACTATAGAATCATCAGTCTATACCCCACACACAGCTCACTACAGAATCATCAGTCTATACCCCACACACAGCTCACTACAGAATCATCAGTCTATACCCCACACACAGCTCACTACAGAATCATCAGTCTATACCCCACACACAGCTCACTACAGAATCATCAGTCTATACCCCACACACAGCTCACTACAGAATCATCAGTCTAtaccacacacacagctcactaCAGAATCAGTCTATACCCCACACACAGCTCACTACAGAATCAGTCTATACCCCACACACAGCTCACTACAGAATCATCAGTCTATACCCCACACACAGCTCACTATAGAATCATCAGTCTATATCCCACACACAGCTCACTACAGAATCAGCAGTCTATACCCCACACACAGCTCACTACAGAATCAGCAGTCTATACCCCACACACAGCTCAGGTAGGACTTAACCATCAAGCCTGATAATTCTGTTCCAGACCAACATTAGCACACCTAATTCAATGAATCAGAGCAGTTGATGAGTTGAAGTGGGTGTGTTCATAGATCTTCAGGACTAGGATCTTCAGAACCCAGTGAGTCCACTCTATAGCTAGCACAGAGACAGTGACACATCTTAGttaaaaaacagagagagaggctggtgaaaAAGACCCTACAGATCTCAATCTTGAACATCGCCTACCAATTTCTGCTTTCTGTTAATTATTCATTCAACCCTAATGGATGGCTTAGTGTCCTGGGGAGTTCTGTGCCCTACCACTGCTTTTAAGAGGTTGGGAaagagcaggtgtgtgtgtgtttgttaagaAACTGGACTACAGTATAAGTGGAGAAGGGGGAaaactgtgtgtgcatgtgtaaatAGCTACTAttgttgaagagagagagatgcagaattctgcaaaaatatcctccgtgtacaacgtggaacaccaaataat
>TU2370620
CTGGAGTCAGACACTaatagagaggaggaagaaagagagagggagtggaagaagacagaatggagagATCTGTGATAAGGAGTGGCACTATTACGTCATTAACGTGGAGTTTCCTGTGGTGACACTCTACGTGGACGGAGTGACCTACGACCCTTACCTGGTGACAGACGATTGGCCGATCCACCCATCTCAGATTGACGTGCAGCTTACTTTGGGTGCCTGCTGGCaagg

Function

symbol description
clstn2 Predicted to enable calcium ion binding activity. Predicted to be involved in positive regulation of synapse assembly and positive regulation of synaptic transmission. Predicted to be located in postsynaptic density. Predicted to be active in cell surface; glutamatergic synapse; and postsynaptic membrane. Predicted to be integral component of postsynaptic density membrane.

NR:

description
calsyntenin-2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965819.1 False 3252 mRNA 0.55 17 30751075 31200797
XM_036965818.1 False 3718 mRNA 0.52 15 30754818 31200797
TU2370620 True 231 lncRNA 0.51 2 30779545 30792617

Neighbor

gene id symbol gene type direction distance location
LOC118944654 LOC106613133 coding downstream 7414 30739780 ~ 30743661 (-)
LOC110507935 LOC106581306 coding downstream 26610 30683454 ~ 30724465 (-)
LOC110507937 acpl2 coding downstream 129193 30593775 ~ 30621882 (-)
LOC118944677 NA coding downstream 141964 30607829 ~ 30609111 (-)
LOC110507931 LOC106581313 coding downstream 756902 29990160 ~ 29994173 (-)
LOC110507962 LOC106613113 coding upstream 131479 31332276 ~ 31358483 (-)
LOC110507961 LOC106581358 coding upstream 430750 31631547 ~ 31633359 (-)
LOC110507960 LOC106581357 coding upstream 435627 31636424 ~ 31638259 (-)
lpar5b LOC106581285 coding upstream 482130 31682927 ~ 31684215 (-)
gpr55a LOC106581353 coding upstream 488010 31688807 ~ 31695914 (-)
G2073164 NA non-coding downstream 179092 30571416 ~ 30571983 (-)
G2073160 NA non-coding downstream 184876 30565662 ~ 30566199 (-)
G2072801 NA non-coding downstream 196341 30525394 ~ 30554734 (-)
G2072656 NA non-coding downstream 385640 30365213 ~ 30365435 (-)
G2073521 NA non-coding upstream 13711 31214508 ~ 31214995 (-)
G2073562 NA non-coding upstream 60874 31261671 ~ 31262139 (-)
G2073592 NA non-coding upstream 63926 31264723 ~ 31266704 (-)
G2073597 NA non-coding upstream 93498 31294295 ~ 31295623 (-)
G2073601 NA non-coding upstream 102478 31303275 ~ 31304066 (-)
G2072732 NA other downstream 354395 30395775 ~ 30396680 (-)
G2072288 LOC100196662 other downstream 919366 29822517 ~ 29833885 (-)
zgc:165508 LOC106613118 other downstream 1099608 29626155 ~ 29651489 (-)
G2071247 LOC106581281 other downstream 1808347 28941354 ~ 28942728 (-)
G2070744 NA other downstream 2226525 28523946 ~ 28524550 (-)
G2074300 NA other upstream 826831 32027628 ~ 32027967 (-)
G2076236 NA other upstream 1677992 32878789 ~ 32880888 (-)
G2077617 NA other upstream 3915585 35116382 ~ 35154043 (-)
G2077934 NA other upstream 4234077 35434874 ~ 35435212 (-)
G2077936 NA other upstream 4234797 35435594 ~ 35436257 (-)
G2073272 NA non-coding downstream 14054 30762222 ~ 30765491 (-)
G2073296 NA non-coding upstream 17860 30810477 ~ 30811288 (-)
G2073303 NA non-coding upstream 29050 30821667 ~ 30825810 (-)
G2073304 NA non-coding upstream 30594 30823211 ~ 30823552 (-)
G2073336 NA non-coding upstream 90261 30882878 ~ 30888312 (-)
G2073337 NA non-coding upstream 91593 30884210 ~ 30885083 (-)

Expression


Co-expression Network