LOC110507993 (LOC106581333)


Basic Information

Item Value
gene id LOC110507993
gene name LOC106581333
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 33105183 ~ 33111804 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965526.1
CTCTAGAGCCCATGTCTTTAAATAGGGTCCTTTCAGGCCTCAGTAACTTATTGAAGGATTGTAGTCGTCCAAACTCAACGGTAGCAGTTGGAATGTGTCTGTCTGAGTCAATGAGTACATTTCAGACTCCTGCTGCTTCAGTCACGCTGGCTGAACTTGGGATAGATACCAGCCTTCAGAACACAATGGACGGACAGGCATATGGGAGAGATGGAACAAAAGTAAAAGCATGGATAGAGGGCGAAAAAAGAAAGGATGacgacctgggtcagaaggaaaTGTTGGTGATGGTGAAGGAAGGATGTGCAGTGAAGGAGGGATCAGCGAAGGTGAAAATGGAGGAGAGAGGTCACTGGGGCAGCAAGACGGAATTTCTTCTGGCCGTAGCAGGGAACGTGGTGGGACTAGGTAACGTGTGGAGATTCCCCTACCTCTGCTACAAAAATGGTGGAGGGGCGTTCCTGGTGCCGTACCTGGTGTTTGTGATGACCTGCGGGGTGCCCTTGTTCCTGCTGGAGACGGCCATGGGACAGTACACTCAGGAGGGGGGTATCACCTGCTGGAAGAGGCTGTGCCCTCTGGCCGAGGGTATCGGCTATGCAGGGCAGTTGATCCTCCTCTACAGCTGTATGTGTTACATCATCATTTTGGCCTGGGCTCTGTTCTACCTGGTCTTCTCCTTCAGCGCTCAGCTCCCCTGGGCAAGCTGCACCAACCCCTGGAACACTGATGACTGTGTTGACTTCTCCTCTCAAAACCGTACTTTCAATTGGACTGGACAGATGAACTCAACCTCTGCAGCGACTGAATTCTGGGAgCGTCGTGTGCTGGCCATCTCGGGGGGTATAGAGGAGGTGGGCAGTGTCAGGTGGGAGGTGCTGCTCTGTCTCATCGTCATGTGGGTCATCTGCTACTTCTGCATCTGGAAAGGGGTCAAGTCAACaggcaagGTTGTATATTTCACTGCTACCTTCCCCTACGCGATGCTGCTGGTACTACTGATCAGAGGCCTGACTCTGCCAGGGGCCCTGCAGGGGGTCCTGTTCTACCTCTACCCTGAACCAGACCGGCTCTCTGACCCCCAGGTGTGGATGGAGGCCGGCTCCCAGATCTTCTTCTCCTACAGTGTGGGAGTGGGCTCCTTAACCGTGCTGGGCTCCTACAATacctacaacaacaactgctacAAAGACTGCCTGTGGCTGTGCTTGCTGAACAGCGGCACCAGCGTGGTTGCTGGGTTCGCAGTCTTCTCAGTCCTGGGGTTCATGGCTCATGAACAGGGCGTCCCCATTGAGGAGGTGGCGGAGTCAGgtcctgggctggcgttcATAGCGTACCCCCAGGCAGTAGCCATGATGCCCCTGCCTCAGATGTGGGCTGCTTGTTTCTTCATCATGATCATTCTACTGGGTCTGGATACACAGTTTGTTGCCATGGAGGTGGTGATGACGTCAGTATCAGACCTGTTTCCCACAGTGCTGCGGAGGACTGGGCGCAGGgagctcttcctcctcttcttctgtcTCACCTGCTTCTTCTTCCAACTCATCATGGTCACAgagGGTGGGATGTATGTGTTCCAGCTGTTTGACTACTATGCCTGTAACGGAACATGTTTGCTCTTCCTCTCTGTGTTCGAGTCCCTGGCCATGGGATGGATATTTGGTGCAGAGCGTATGTATGGCGTAATAGAGGACATGACAGGGATGAGGCCTAACCCCGTCTTCAAGCTCTGCTGGCTCTACCTGACCCCTCTGGTTTCCCTGGTGTCGTTCATCTGCTCTCTGGTGGAGTACCAGCCCCTGACCTTCAACCGCTGGTATGTGTACCCAGGATGGGTGTATGTTCTGGGCTGGCTGTTGGCCCTCTCCTCCATCGTCCTGGTCCCCGGGTGGGCCCTGCTGCAGATCTGCATCGGGACAGGCAGCCTTAGAGAGCGTTTCCTCCACTTGTGTCGGCCAGACAATGACCTCCCGTTGACCCGGAAGAGAAAGGCTGTCCTCTGGAGCAGAGATGGAGGTACACTCATGACTGCAGCAGGGGAAAGCACAGACAACTGACACACACCCAGAA

Function

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965526.1 True 2076 mRNA 0.55 13 33105183 33111804
Loading

Neighbor

gene id symbol gene type direction distance location
vwa7 LOC106581332 coding upstream 11360 33079794 ~ 33093823 (+)
LOC110507986 NA coding upstream 141527 32943807 ~ 32963656 (+)
LOC110507985 LOC106613152 coding upstream 513281 32528573 ~ 32591906 (+)
LOC110507983 LOC106581345 coding upstream 616524 32270206 ~ 32488659 (+)
LOC118944767 NA coding upstream 1233476 31870740 ~ 31871707 (+)
LOC110507998 LOC106581335 coding downstream 47064 33158868 ~ 33181390 (+)
LOC110507999 LOC100380744 coding downstream 72774 33184578 ~ 33195813 (+)
robo1 robo1 coding downstream 279388 33391192 ~ 33935721 (+)
LOC110507198 NA coding downstream 1649814 34761618 ~ 34766144 (+)
LOC110507199 LOC106613190 coding downstream 1709817 34821621 ~ 34827171 (+)
G2075261 NA non-coding upstream 10224 33094587 ~ 33094959 (+)
G2075229 LOC106581331 non-coding upstream 73747 33030717 ~ 33031436 (+)
G2075207 NA non-coding upstream 74680 33003805 ~ 33030503 (+)
G2075228 NA non-coding upstream 75877 33021682 ~ 33029306 (+)
G2075210 NA non-coding upstream 121305 32983353 ~ 32983878 (+)
G2075308 NA non-coding downstream 20037 33131841 ~ 33134427 (+)
G2075349 NA non-coding downstream 70750 33182554 ~ 33182857 (+)
G2075355 NA non-coding downstream 96559 33208363 ~ 33208567 (+)
G2075359 NA non-coding downstream 102549 33214353 ~ 33214571 (+)
G2075409 NA non-coding downstream 236314 33348118 ~ 33432600 (+)
G2075208 NA other upstream 114955 32988501 ~ 32990228 (+)
G2074973 NA other upstream 481215 32623624 ~ 32623968 (+)
G2074650 NA other upstream 640307 32464238 ~ 32464876 (+)
G2075508 NA other downstream 404437 33516241 ~ 33521004 (+)
G2075687 NA other downstream 705728 33817532 ~ 33817988 (+)
G2075724 NA other downstream 787473 33899277 ~ 33899623 (+)
G2076000 NA other downstream 1390445 34502249 ~ 34502705 (+)

Expression

LOC110507993(LOC106581333) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110507993(LOC106581333) Expression in each Bioproject

Bar chart with 14 bars.
LOC110507993(LOC106581333) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network