LOC110508006 (lamtor1)


Basic Information

Item Value
gene id LOC110508006
gene name lamtor1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36433996 ~ 36437937 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588446.2
TTGTTGCTGAGCCCTGGCTGCGCAAAAACTGCTGTCATGTGATAGGCTTCGTTTGTTGTAGTAGCTGACAGAAGCGGTCAGCGAGAAAGAGAAACAAAGAAAGAAGTTTGATTCCTTTCCCGTGGACTCAGACAGGGTCTGTTTCTCTTATTATAGCAATAGTTTCCCGGGTGGAGTAGTTGGAGATTGGGTTCGCGTACCTGGCAGACCGCCGAACGCCCAGCGGACGCCATGGGTTGTTGTTACAGTAGCGAGAACGAGACCACCGAGCAGGACCCTGACGAGCGTAAGCCGCTGATCCCCCACCCGAACCCCGACAGCAAGCCCCTCAACGGCACAGAATGGAACTCCACCAGTGTACCCTCAGCCCGCACAGACGAACAGGCCTTACTCACATCCATCCTTACCAAAACAGCCCTGAACATCATCGATGTCTCGGCTGCAGACTCTCAAGGCATGGAGCAGCATGAGTACATGGACAAAGCTCGGCAATATAGTACAAAACTGGCCTTGTTGAGTAACAGTCTGTCTCAGAAGaagcccctccctctcccttccctcaccAGCCAACCGCACCAAGTGCTCGCTAGTGATCTGGTGCCATATTCGGATGTACAACAGGTGTCCAAGATAGCTGCCTATGCTTACAGTGCAATCTCTCAGATCAAGGTGGACGCTAAAGAAGAGCTAGTGGTTCAATTTGCCATCCCCTGATCTACACTCTGGCCTCCATAATACACCTCCCGTCCTGTCCCCAATGCCCACACTGCATCTATGTGTCCCAGTCCCTGTGCTACCCAGCTATGCCACCAGGAACCTGCTGAGGACTATGACAACCAGGCCTCCCCTGCTGAAAGGGTTAACCAACCTTGCCCTGCACCCCTCAGAACCACCTTTCAAAGCCACCATTCATCCTTCTTTCACCAGCCGTCAAATGTTATGGCAGTATAATGGTGTTAGGGCAGtctttgtttttgttattttaaatGTTCTTGTTTGAAGAGTGACTGAGTCTGACTGAATAAACGGTTAGCTAGCTGCATGACTAGGCTGCTGCTGGCGTTAGCGCTGGCTGTGAGTTTTTCAGGTGTAGCTAACCTCGTCTGATATGCAGCTCCGGTAAtgtactaactaactaaccacaGCTAGGAAAAGAGGGTGATTATGCATGTCCAAATGTAGCACAGGAACAGGGCAAAAAAAATATGTCCACAGCCAGCCAACCCACTACGGTGAGCATGGGGATGCTGTTCTGACACGGTGTGGACCGGTCACCCAGAACACACATCCCACCCCTCATGTCATCAATATGAATTTCTAGAAAGAACCCTCACTATAGTGTTCCTTATCTTTGTTAAAATCCTTAGATTGACCTAAAGTAAGTTGGGTAGGTTTAAAAACAGGAGGGACTTAGTTCAACTATAGTACCTAAGTTCAAATCTGATATGACCCATATGAGTCTTCCCTTGAGTTCAGCTCATGTTGGCAGAGGTGAGGACAGAGGTTGGAATCCACATGGGTTTCTCTGATTTCTGGGGGAAACATGCTTCGCACTTCAATAATTTAGCTGGCAGTCCTTGAATTCATATCTTTAGACTTCACAGAAACAATACAGCTGGGGGTGGAACTGGGCTTGGGGGGAGGGTTCGGGGGCTTGTAATGTAAATGAATCAGTGAAGTGTTGATGCCTTCTATGTACAGATTTATGTGATTCAGTCAGAAGCAAGAAATGGAGTGTATGCACCTCCCCATTGTAGAGTCTGTTGGTCAGGATTGGCTAAAGCTCCAATGAAGTTGTTTTAGGAGCCAATCAAAACTAAGGATACAGCAGCCCAGTTTTTATGACATAAAAGGAAAAAAAACTTAACACCCAAGTTTGTTTGAATTTTTAAACAAAACAGATTGTGATGAGTTACTCACATTAACCATGAACTGAAAGCTGTCATGGCAGTTTGAGATAAACAACCATAACCTGTGAGTATCCCCTAAATTAAAACGATCAGAGGCGTTGTGATTATTTATTCATGTTTTAAGTGTATTTATGCTccggggtgagtgtgtgtgtgggtgggtgcctCTCTGGGGTCTTTAAAGGGATGATCATCTGCAAGGCCGTGTTTATTTGCCACTTTTTGCAGTGtgcttgttttgtttgttttgttacttCAGTGTGCAATAGTACCTGGATAACATTGTTCATTTCTTAGGCTAGTACCAAAAGGTTTATTAAGATATActgttaatacattttttttttccccAAATAATGAATTCATTAAAGACTTTCAACAATTAAA
>TU2376815
GGCTGCGCAAAAACTGCTGTCATGTGATAGGCTTCGTTTGTTGTAGTAGCTGACAGAAGCGGTCAGCGAGAAAGAGAAACAAAGAAAGAAGTTTGATTCCTTTCCCGTGGACTCAGACAGGGTCTGTTTCTCTTATTATAGCAATAGTTTCCCGGGTGGAGTAGTTGGAGATTGGGTTCGCGTACCTGGCAGACCGCCGAACGCCCAGCGGACGCCATGGGTTGTTGTTACAGTAGCGAGAACGAGACCACCGAGCAGGACCCTGACGAGCGTAAGCCGCTGATCCCCCACCCGAACCCCGACAGCAAGCCCCTCAACGGCACAGAATGGAACTCCACCAGTGTACCCTCAGCCCGCACAGACGAACAGGCCTTACTCACATCCATCCTTACCAAAACAGCCCTGTAAGACACAAacattctctttctcctctatcaTCACGGTGTTTATTTCATTGGAATTGAATTCTGCTGAATACCTGCCTGTCTTTCCATTTCTTAGGAACATCATCGATGTCTCGGCTGCAGACTCTCAAGGCATGGAGCAGCATGAGTACATGGACAAAGCTCGGCAATATAGTACAAAACTGGCCTTGTTGAGTAACAGTCTGTCTCAGAAGaagcccctccctctcccttccctcaccAGCCAACCGCACCAAGTGCTCGCTAGTGATCTGGTGCCATATTCGGATGTACAACAGGTGTCCAAGATAGCTGCCTATGCTTACAGTGCAATCTCTCAGATCAAGGTGGACGCTAAAGAAGAGCTAGTGGTTCAATTTGCCATCCCCTGATCTACACTCTGGCCTCCATAATACACCTCCCGTCCTGTCCCCAATGCCCACACTGCATCTATGTGTCCCAGTCCCTGTGCTACCCAGCTATGCCACCAGGAACCTGCTGAGGACTATGACAACCAGGCCTCCCCTGCTGAAAGGGTTAACCAACCTTGCCCTGCACCCCTCAGAACCACCTTTCAAAGCCACCATTCATCCTTCTTTCACCAGCCGTCAAATGTTATGGCAGTATAATGGTGTTAGGGCAGtctttgtttttgttattttaaatGTTCTTGTTTGAAGAGTGACTGAGTCTGACTGAATAAACGGTTAGCTAGCTGCATGACTAGGCTGCTGCTGGCGTTAGCGCTGGCTGTGAGTTTTTCAGGTGTAGCTAACCTCGTCTGATATGCAGCTCCGGTAAtgtactaactaactaaccacaGCTAGGAAAAGAGGGTGATTATGCATGTCCAAATGTAGCACAGGAACAGGGCAAAAAAAATATGTCCACAGCCAGCCAACCCACTACGGTGAGCATGGGGATGCTGTTCTGACACGGTGTGGACCGGTCACCCAGAACACACATCCCACCCCTCATGTCATCAATATGAATTTCTAGAAAGAACCCTCACTATAGTGTTCCTTATCTTTGTTAAAATCCTTAGATTGACCTAAAGTAAGTTGGGTAGGTTTAAAAACAGGAGGGACTTAGTTCAACTATAGTACCTAAGTTCAAATCTGATATGACCCATATGAGTCTTCCCTTGAGTTCAGCTCATGTTGGCAGAGGTGAGGACAGAGGTTGGAATCCACATGGGTTTCTCTGATTTCTGGGGGAAACATGCTTCGCACTTCAATAATTTAGCTGGCAGTCCTTGAATTCATATCTTTAGACTTCACAGAAACAATACAGCTGGGGGTGGAACTGGGCTTGGGGGGAGGGTTCGGGGGCTTGTAATGTAAATGAATCAGTGAAGTGTTGATGCCTTCTATGTACAGATTTATGTGATTCAGTCAGAAGCAAGAAATGGAGTGTATGCACCTCCCCATTGTAGAGTCTGTTGGTCAGGATTGGCTAAAGCTCCAATGAAGTTGTTTTAGGAGCCAATCAAAACTAAGGATACAGCAGCCCAGTTTTTATGACATAAAAGGAAAAAAAACTTAACACCCAAGTTTGTTTGAATTTTTAAACAAAACAGATTGTGATGAGTTACTCACATTAACCATGAACTGAAAGCTGTCATGGCAGTTTGAGATAAACAACCATAACCTGTGAGTATCCCCTAAATTAAAACGATCAGAGGCGTTGTGATTATTTATTCATGTTTTAAGTGTATTTATGCTccggggtgagtgtgtgtgtgggtgggtgcctCTCTGGGGTCTTTAAAGGGATGATCATCTGCAAGGCCGTGTTTATTTGCCACTTTTTGCAGTGtgcttgttttgtttgttttgttacttCAGTGTGCAATAGTACCTGGATAACATTGTTCATTTCTTAGGCTAGTACCAAAAGGTTTATTAAGATATActgttaatacattttttttttccccAAATAATGAATTCATTAAAGACTTTCAACAATTAA

Function

symbol description
lamtor1 Predicted to contribute to guanyl-nucleotide exchange factor activity and molecular adaptor activity. Predicted to be involved in several processes, including cellular response to amino acid stimulus; positive regulation of MAPK cascade; and regulation of receptor recycling. Predicted to act upstream of or within several processes, including cholesterol homeostasis; lysosome organization; and positive regulation of TOR signaling. Predicted to be located in late endosome membrane; lysosomal membrane; and membrane raft. Predicted to be part of Ragulator complex. Predicted to be active in lysosome. Orthologous to human LAMTOR1 (late endosomal/lysosomal adaptor, MAPK and MTOR activator 1).

NR:

description
ragulator complex protein LAMTOR1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588446.2 False 2297 mRNA 0.46 5 36433996 36437937
TU2376815 True 2378 lncRNA 0.45 4 36433997 36437922

Neighbor

gene id symbol gene type direction distance location
nlrc3l LOC106581410 coding downstream 7959 36396012 ~ 36426037 (-)
LOC110508009 nox4 coding downstream 69479 36295050 ~ 36364517 (-)
LOC110507213 LOC106581415 coding downstream 169636 36129462 ~ 36264360 (-)
LOC110507212 NA coding downstream 325551 36107716 ~ 36108445 (-)
LOC110507979 rab38 coding downstream 326952 36076143 ~ 36107044 (-)
hs020 hs020 coding upstream 4345 36442282 ~ 36446146 (-)
LOC110507944 LOC106591050 coding upstream 114907 36552783 ~ 36560132 (-)
LOC110507945 clpb coding upstream 141108 36579045 ~ 36593650 (-)
LOC118944723 NA coding upstream 412958 36850895 ~ 36851620 (-)
cep57 LOC106581428 coding upstream 839757 37277694 ~ 37295837 (-)
G2078767 NA non-coding downstream 2028 36431685 ~ 36431968 (-)
G2078753 NA non-coding downstream 50153 36383185 ~ 36389384 (-)
G2078716 NA non-coding downstream 52997 36380594 ~ 36380999 (-)
G2078720 LOC106581411 non-coding downstream 62907 36365756 ~ 36371089 (-)
G2078773 NA non-coding upstream 1572 36439509 ~ 36440683 (-)
G2078776 NA non-coding upstream 9232 36447169 ~ 36447481 (-)
G2078816 NA non-coding upstream 71108 36509045 ~ 36509728 (-)
G2078826 NA non-coding upstream 87063 36525000 ~ 36525640 (-)
G2078830 NA non-coding upstream 90372 36528309 ~ 36530888 (-)
G2078637 NA other downstream 329855 36102700 ~ 36104141 (-)
G2078263 NA other downstream 557348 35873302 ~ 35876648 (-)
G2078260 NA other downstream 567743 35858902 ~ 35866253 (-)
G2079261 NA other upstream 356831 36794768 ~ 36861357 (-)
G2079301 NA other upstream 484325 36922262 ~ 36928132 (-)
G2079423 NA other upstream 816945 37254882 ~ 37256026 (-)
G2079412 LOC106581431 other upstream 835569 37273506 ~ 37276945 (-)

Expression


Co-expression Network