LOC110507273 (LOC106581487)


Basic Information

Item Value
gene id LOC110507273
gene name LOC106581487
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40878111 ~ 40883459 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587156.2
GCAATATATTAACCTTTACCTATCTATAGTAATGATACTGAACTCCTCATCTCTGAGCCTTCTATTGAACTACTCCTCTGCCTCGTCCACTTCCTCATCCTGTCGTCTGCGGGAGCATTTCAGTCTGAATGGAATGTACCAGAAGGGTGATGTGATTCTGGGAGGTCTGTTTGAGGTCCACTACTTCACTGTGTTCCCTGAGCTGTCTTTCACATCAGAACCCCAGCAGCTCTACTGTGAGGGTTTTACCAGTTGTGGTTTCCAGCAGGCCCAGACTATGGCGTTTGCTGTAGATGAGATCAACAGAGACCCTGACCTTCTGCCAAACATCAAGCTCGGATACCAGCTCTATGACGACTGCCAGAAGTTGGGAGTATCGCTCCGTGCTGCCCTGTCATTGGCCAGTGGGACAGAGAAAGAGTTCTTATTGGATGATAATTGTTCTGGGTCACCCCCGGTGCTAGGGATTGTGGGAGACCCAGGGTCCACAAACTCCATCGCCATCTCCAGTGTCCTAGGGCTGTTCAGGGTTCCCATGGTGAGTCATTACGCCACGTGTTCCTGTCTGAGCGACCGGGGAAAATACCCATCCTTCTTCAGAACCATCCCCAGTGATTCCTTCCAGGTGCGAGCCATGATCCAGATCCTACGTCGGTTGGGTTGGACCTGGGTGGGACTGCTGTTCAGTGATGATGACTATGGAGTTCATGCTGCCCGGTCCTTCCAATCAAGCCTGGCCGAGTCAGGGGGCTGTGTGGCCTATTCCCAGGTCCTGCCCAAAGACAACCGCCCCACTGAGCTGCAGAGGATCGTGGGAGAGATCAAGAGCTCCTCTGCtcgtgtggtggtggtgttctcCAACGAGGCCTACTTGCTCCCTCTGGTGGATGAGGTGGTGGTGCAGAATGTGAAGGGTCTCCAGTGGATCGCCAGTGAAGCCTGGACCACCTCCTCTGTGTTTCACACCCCCCGTCTCATGCCCTACCTGGGGGGTACCCTGGGTATCGCCATCCGTCGTGGAGAGATACCCGGCCTCAGGGACTTCTTGCTTAGCATCCGCCCCAACGACCAACCTGACAATAACCCTGGAAACAACATGGTGAGACAGTTCTGGGAGGCTGTGTTTGGGTGCAGGTTGGAGCCCCCAGCAGGTTGGGTGGAGGCTGGGGGTGATGTATGTACAGGTCAGGAGGACCTGAGGGATGTGGAGACCAACTGTGGGGACGTGTCTGAGCTCAGGCCGGAGTATAACGTGTATAAGGCAGTGTACGCCCTGGCCCATGCCCTGCATGACCTAATGCAGTGTGTGCCAGGGACAGGACCTTTCAGTGGGAACCGCTGTGCCAGCCTACAGAGACTGGAGCACTGGCAGcTGGTCCATTACCTGGAGAGGGTTAACTTCACCACAGGGTTTGGTGATCGCGTTTCTTTCGATGACAACGGGGACGCCCTGGCCATCTATGACATCCTGAACTGGGCGTGGCTCCAGGACGGGAGTGTTCAGGTGGAGAATGTGGGTGTGATTGACGAATCAGCCCCCGCAGGACAAGAGCTCACACTGGATGAGGACAGAATTTTCTGGAACTTTGAGTCAAGAAAGCCCCCACGATCAGTATGCAGTGAGAGCTGTCCCCCAGGCACCCGTGTAGCCAGGAAGAAGGGGGAGCCTGTCTGCTGCTTCGACTGCATCTCCTGTGCTGAGGGAGAGGTCAGCAACACCACAGaCTCGGCCGAGTGCTTGAAATGTCCAGAGGACTTCTGGTCCAGCCCGGAGCGTGATCTCTGCATCCCTAAGGGGGTTGAGTTCCTCTCCTACCAGGAATCCCTGGGCATCTCCTTGATGACCGCCTCGTTGCTAGGAGCCCTCATCTGTGCAGTGGTCCTCGGAATCTTCACCCACTACCGGAACACGCCTGTTGTCAAGGCCAACAACTCTGAGCTCAGCTTCCTGCTTCTTCTGTCACTCAAACTCTGCTTCCTGTGCTCGCTGCTGTTCATTGGCCGGCCACGGCTGTGGACGTGTCAGCTGAGGCATGCAGCATTTGGTATCAGCTTTGTTCTCTGTGTCTCCTGTATACTGGTGAAGACAATGGTGGTGCTGGCTGTGTTCAGGACCTCTAAGCCTGGGGGGAAGGCAAGCCTGAAGTGGTTTGGTGCTGGGCAGCAGAGAGGAACAGTCCTGGTTCTCACCTCATTCCAGGCTGCTATCTGCACAGCCTGGCTGGTTTCAGCCTCTCCAACTCCACACAAAAACATGCGCTACCATAATGATAAGATTGTATATGAGTGTGTGGTGGGGTCGGTAGCAGGGTTCGGAGCGTTGTTAGGCTACATCGGCCTCCTGGCATTCCTTAGCTTCCTCTTGGCTTTCCTGGCTAGGAATCTTCCAGACAACTTCAATGAGGCCAAGTTCATCACCTTCAGCATGCTGATCTTCTGTGCTGTTTGGATCTCCTTTGTCCCTGCCTACATCAGCTCTCCTGGGAAGTATGCAGACGCTGTGGAGATATTCGCCATCTTAGCTTCCAGCTTTGGCATCCTGGTGGCGCTGTTCGGCCCAAAGTGTTACATCATCCTGCTGAGGCCAGAGAGGAACACCAAGAAGGCTCTGATGGGCCGGGCCTCAACCAAGACATAGGGAGAATCTTCGTTACCTTTCCTTGttttctcacttcctctctcctcgCTTTCATCTCAAAACCAATTAGATTAGAAGGTCAGGAGGGGCGGGATATCTAACCTTCTCATTCATTGAGTTTTGAAAAGGAGACCGAGGAGAGAGGACACGAGGAATCACGGAAAAgtaattgagattctcccatagGCTCAATACCATAACAGCAGTTTACATTGGATTCCTCTCCTTGTCTTCTACACGTCCTCTGTGCTGATCTGAAATATGAACACTAGGTGGAGGTACTATGCCTGCTAGGGATTTGCTTCACATTCTGTCATGcaaagaaaggaaaggagaaatgTATAGTAACAGAGTTTGATGGTCTCAAATAGTTTGAAGTAGCTCCTTTTTGTTTCCACTTCTGTTTGTAGTTTGATGGCAATAAATGAAATCAAAGagattttattgttttgttagcaCTCTAGTGATGTgtgcatgtgccttttattgattATAATTATGATGTTCTGTGACTAAACATTATTTCCTTGGCCTGTTAAGTAGGCTTTGAATGTATTTAATTTGTCTGTGTGGGTTTCTGCATCGAAAAgctttcaatttcaatttaatcaTCACATCGTGTGGAACAGCTTAACTTTCCCGTTCCTTCTCAAGGATTCTGCTGCCACACTTATTCACCAATGAATTCATTATTCATTAATGCACATTTTCATTTAATAAAACAGTTTGACCTGAAAGGAGTTGCTTGAATGTGTTTTTATTGAACAGTTGAAATTTAGCGATATATTTTATAAAAATTTCAGGAAACTGTGTCATATTGGAATAGAGAATTACACAC
>TU2381830
CCGTCTCATGCCCTACCTGGGGGGTACCCTGGGTATCGCCATCCGTCGTGGAGAGATACCCGGCCTCAGGGACTTCTTGCTTAGCATCCGCCCCAACGACCAACCTGACAATAACCCTGGAAACAACATGGTGAGACAGTTCTGGGAGGCTGTGTTTGGGTGCAGGTTGGAGCCCCCAGCAGGTTGGGTGGAGGCTGGGGGTGATGTATGTACAGGTCAGGAGGACCTGAGGGATGTGGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587156.2 False 3476 mRNA 0.50 9 40878111 40883459
TU2381830 True 240 TUCP 0.59 2 40880845 40881237

Neighbor

gene id symbol gene type direction distance location
LOC110508043 LOC106581485 coding downstream 24061 40847274 ~ 40854050 (-)
LOC110508038 LOC106581456 coding downstream 223588 40620620 ~ 40654523 (-)
LOC110508039 LOC106581455 coding downstream 271264 40601473 ~ 40606847 (-)
LOC110508036 kcnab1 coding downstream 313710 40299870 ~ 40564401 (-)
LOC110508035 tiparp coding downstream 626396 40223863 ~ 40251715 (-)
LOC110507274 LOC106581485 coding upstream 24903 40908362 ~ 40913641 (-)
LOC110507275 LOC106581486 coding upstream 44928 40928387 ~ 40933600 (-)
LOC118944770 LOC106581475 coding upstream 60869 40944328 ~ 40952721 (-)
LOC110508046 LOC106581475 coding upstream 72384 40955843 ~ 40963116 (-)
LOC110508045 LOC106581475 coding upstream 84435 40967894 ~ 40977862 (-)
G2082938 NA non-coding downstream 161 40846265 ~ 40877950 (-)
G2082944 NA non-coding downstream 10688 40860084 ~ 40867423 (-)
G2082885 NA non-coding downstream 37083 40840572 ~ 40841028 (-)
G2082884 NA non-coding downstream 37578 40840187 ~ 40840533 (-)
G2082850 LOC106581453 non-coding downstream 110004 40765276 ~ 40768107 (-)
G2083118 NA non-coding upstream 162200 41045659 ~ 41045898 (-)
G2083126 NA non-coding upstream 175173 41058632 ~ 41115832 (-)
G2083178 NA non-coding upstream 270559 41154018 ~ 41154490 (-)
G2083189 NA non-coding upstream 286681 41170140 ~ 41170468 (-)
lekr1 LOC106581448 other downstream 690546 39984103 ~ 40190414 (-)
G2082006 NA other downstream 1204658 39672732 ~ 39681547 (-)
G2081616 NA other downstream 1444413 39433278 ~ 39433698 (-)
G2081106 NA other downstream 1940166 38937211 ~ 38937945 (-)
G2083443 NA other upstream 540080 41423539 ~ 41424040 (-)
LOC118944786 LOC106581464 other upstream 792792 41573411 ~ 41680789 (-)
G2084740 LOC106613316 other upstream 1901168 42784627 ~ 42785035 (-)
G2085726 NA other upstream 3028701 43912160 ~ 43912680 (-)

Expression


Co-expression Network