LOC118944770 (LOC106581475)


Basic Information

Item Value
gene id LOC118944770
gene name LOC106581475
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40944328 ~ 40952721 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965619.1
TAACtgctctcctgccctctctctgacTGTTAGAGGGGATAGGTGTGAGTGAGGATGTCTCTGCTGTTCTTGTGGTCtctatcttcctccctcacacTCAGCCCATCCTCCACCCTAGCCACAGACACAGAGTGTGTTCTGCTGAGTGGCTTTGATCCTGGGTTCGTGGCTGATGGTGACTTTGTCATTGGGGGTATTTTCCCCCTGCACTACAACCAGGAGATGCCAGACGTCAACTACACCTACCAACCAACAGCCGTCAGGTGCAATGGGTTTGATCCGAGAGCTTTCCGCTGGGCTCAGACCATGAGGCTGGCGGTGGAGGAGATCAACCAGAGTGAGCAGCTGCTGCCCAACCACATGCTTGGCTACAAGATCTTTGACTCGTGTGCCTATCCTCTGACAGGGCAGAGGGCTGCTCTGGCAATGTTGAATGGACTGGGCCAGGCTCACACTCACATGTGTTCTggtgcctctcctctcctggctgtTATCGGAGAATCCGGTTCTGCTCAGTCTATTGTCGTATCCAGAATCCTGCAGCCCTTTAAAATACCCATGATCAGCTACTTCTCGTCGTGCGCGTGCCTCGGTGACAGGAGGAAGTACCCAACCTTCTTCAGAGTAATCCCCAACGATGACTACCAGGTGAAGGCTATGGCTCAGCTGCTGGTACGGTATGACTGGCGCTGGGTGGGGGTGGTGCGTGGGGACCATGAATATGGGCACTTTGCCCTACAGGGGCTGCTGAGGGAGCTAAAGGGGACGGGGGTGTGTGTGGCCTACCAGGAGATGATCCCTCTGCTCTACAATCAGCAGAGGGCCCTGGAGATCATAGAggTCATGCGTAGCTCCACAGCGCGGGTAGTGGTGGTGTTCTCTGCCGAGGGGGAAATGACCCCCTTCCTGAAGGACTACATGGCACAGAACATCACAGGGATCCAGTGGGTGGCCAGCGAGGCCTGGGTCACTgcctctctcttcaccaccagcgAGTACTTCCCCTACCTGGGGGGCACCATCGGCTTTGGGATCAGGCAGGGACAAATCCCAGGGCTCCGGGACTACCTGCAGACGGTGAACCCCCGCAGcACCCTGATGCCCCCCTGTTCAGGGCAGGAGATTCTTCTGGAGCAGCACTCAGCCTACATGAACACCTCCAGCCCCAGAGTGGCCTATAATGTGTACAAGGCTGTGTACGCCATCGCTCACTCACTGCACAACCTCCTCCACTGCCAGGCTGGGGCAGGACCCTTCCACAACCGCTCCTGCGCTCACAGCACCAATGTTCACCCCTGGCAGCTGCAGCACTATCTACAAGAACTTGCCTTTTACATTTCTGGGGAGGAGGTGAACTTTGACCTGAAAGGGGATTCCATCCCGTACTATGACATCATCAACTGGCAGAGGGGGTCGGGTGGCAACATGGAGTTCATCAACGTCGGTCTGTTCGACGGAGCAAAGGCCTCTGGGAAGGAGTTGGTGATCCAGGAGGAGAAGATCCTGGTGGTCTCCGtgtgcagtgccagctgtgctcCAGGATCCAGGAAGGCTGTCCGTCGTGGGGAATCTCTGTGCTGCTTTGACTGTGTACCATGTGACAGCGGCAAGATTAGTAATCAGACAGATTCTATAGACTGCACAGAATGTCCCGAAGACTACTGGTCAAACGCTGATGGAACAATGTGCATCCCCAAAGTGGTGGAGTTTCTTTCCCATGATGCAATGGGGATAGCCCTGACAGTGATCGCTGTAGTGGGCGCCTGTCTGACCGTGTCCATCCTGGCAGTCTTCCTCCATCACAGGACCACGCCCATCGTCCGCGTCAACAACTCTGAGCTGAGTTTCTTTATCCTTCTCTCCCTGACTCTGTGCTTTCTGTGTGCGCTGATGTTTATCGGGGAGCCCACCTCCTGGTCCTGCATGCTGCGCCACACCGCCTTCAGCATCACCTTCTCCCTCTGCATCTCCTGCATCCTGAGCAAGACTCTGGTGGTCTTGGCAGCCTTCACTGCCGCCAGGCCTGGGAACAACATTATGAAGTGGCTGGGGCCCAAACAGCAGAGGGTAATCATATTCTCCTGCACCCTGGTTCAGGTGCTGATCTgtgctgcctggctcattgctgCACCTCCCTACCCCTCCAAAAATATCCAGGACCAACGCTCTAAGATCATTCTGGAGTGCAGTGTGGGCTCCCAACTGGCCTTCTGGTGCGTTCTGGGATACATCGGCCTCTTGGCCTGTCTGTGCTTCATCCTGGCTTTTCTGGCCCGGAAACTGCCAGGCAACTTTAATGAGGCCAAATTCATCACCTTCAGCATGCTGATCTTCTGTGCCGTGTGGATCTCCTTCATCCCTGCCTACGTCAGCTCTCCTGGGAAGTACACAGTAGCTGTAGAGATCTTTGCCATCCTGGCCTCCAGCTTTgggctgctgttctgtctgtttgcTCCAAAGTGTTACATCATCCTCCTGAAGCCAGAGAAGAACACTAAACAACATCTCATGGGGAATAAAAAGTAGTTAATGagtaattcaaaatgtatttttccttATGTGCTTTTGTTACTTAAAATGTACAGTTTATCCCATATGGGCTACAATctgcactgagtatacaaaacattaacaacacctgATCTTACCATGACATAGACAAACCAtctgaatccaggtaaaagctaag

Function

NR:

description
extracellular calcium-sensing receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965619.1 True 2689 mRNA 0.54 9 40944328 40952721

Neighbor

gene id symbol gene type direction distance location
LOC110507275 LOC106581486 coding downstream 10728 40928387 ~ 40933600 (-)
LOC110507274 LOC106581485 coding downstream 30687 40908362 ~ 40913641 (-)
LOC110507273 LOC106581487 coding downstream 60869 40878111 ~ 40883459 (-)
LOC110508043 LOC106581485 coding downstream 90278 40847274 ~ 40854050 (-)
LOC110508038 LOC106581456 coding downstream 289805 40620620 ~ 40654523 (-)
LOC110508046 LOC106581475 coding upstream 3122 40955843 ~ 40963116 (-)
LOC110508045 LOC106581475 coding upstream 15173 40967894 ~ 40977862 (-)
LOC110507227 LOC106581475 coding upstream 30069 40982790 ~ 40990771 (-)
LOC110507228 LOC106581473 coding upstream 55718 41008439 ~ 41012482 (-)
LOC110508047 LOC106581470 coding upstream 79198 41031919 ~ 41035966 (-)
G2082938 NA non-coding downstream 66378 40846265 ~ 40877950 (-)
G2082944 NA non-coding downstream 76905 40860084 ~ 40867423 (-)
G2082885 NA non-coding downstream 103300 40840572 ~ 40841028 (-)
G2082884 NA non-coding downstream 103795 40840187 ~ 40840533 (-)
G2082850 LOC106581453 non-coding downstream 176221 40765276 ~ 40768107 (-)
G2083118 NA non-coding upstream 92938 41045659 ~ 41045898 (-)
G2083126 NA non-coding upstream 105911 41058632 ~ 41115832 (-)
G2083178 NA non-coding upstream 201297 41154018 ~ 41154490 (-)
G2083189 NA non-coding upstream 217419 41170140 ~ 41170468 (-)
lekr1 LOC106581448 other downstream 756763 39984103 ~ 40190414 (-)
G2082006 NA other downstream 1270875 39672732 ~ 39681547 (-)
G2081616 NA other downstream 1510630 39433278 ~ 39433698 (-)
G2083443 NA other upstream 470818 41423539 ~ 41424040 (-)
LOC118944786 LOC106581464 other upstream 723530 41573411 ~ 41680789 (-)
G2084740 LOC106613316 other upstream 1831906 42784627 ~ 42785035 (-)
G2085726 NA other upstream 2959439 43912160 ~ 43912680 (-)

Expression


Co-expression Network