LOC110507279 (LOC106581477)


Basic Information

Item Value
gene id LOC110507279
gene name LOC106581477
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 41267775 ~ 41274291 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965616.1
TTCATGGTGGCTTTTACCTCCTCAAGCGCTATGgtgatgAGCCTCTGGGGCTGGCTGTGGCTGCTCTACTGTCTCCATGTCCCTGGGTCTGTCTGGGGTCtggatggaggtggagagggggccTGTCGGCTGATAGCTAAGCCCGTCTCGGGCAGTGTTTATCAGGCAGGAGATGTGGTCATTGGGGGCCTGTTCCCGATCCATGTAGAAGCCCCTCTACCAGAGCAGGAGTTCAGGAGCATTAAGGGAAATTCTACCTGTACAATTTTCAAACAGCGTGCTTACCGCTGGCTCCAGACTATGATCTTTGCTGTGGAGGAGATTAACCGTGACCCAGCCCTCCTGCCTAACCTCACCCTGGGGTTCCTGGCTTCTGACACATGCCGGTCAGAGGGCACCACCCTGGGGGCAGCCCTTGCCATGGTGACCGGCAAGGAGACCTCCGTGGTGGAAACAGATTGTGGCACAACCCCTGAGGTTCCCGTCATCATCGGGGATGCCCGCTCCACAGCCTCCATCGTGGTGGCACAGACCCTCGGGCCGTTTGATTTACCCATGGTGAGTTACTTAGCCACCTGTACGTGTTTGAGTGACAACTGGAAGTACCCCTCATTCTTCCGTACTGTACCCAGCGATGCCTTCCAGGCTCGGGGCATGGCCAAGCTTCTGCGTCTGCAGAGATGGGTGTGGGTGGGACTGGTGTCAGAGGATGATGACTATGGCAAGTTTGGGGTTCAGCTGCTTCTCCAAGAGCTCCAAGGATCTGGGGTACCGTCTAAGAGAAAAATCAGGCACATTGTGGACACCATCAGAGGATCTACTGCCAGAGTGGTGGTGGCGTTTGTAGGATTCACAGGTCATTCAGGGGCCCTGATGGAAGAGGTTGTCCGTCAGAACATTACAGATAAGCAGTGGATTGCCTCAGAGGCCTGGGTCACCTACTCTACTATTGCCTCCCCGAAAAACATGCCCTCTCTtgccgggacaattggttttgcCCTGAAGAAAGCTGACATTCCCGGCCTGGGGCCTTTCCTAACACGCCTACATCCAGACGGGGACTACCAGAAGTCCGACCCCTTCCTGAGGGAATTGTGGGAGGAGATGTTTGGGTGTTCTCTGGGGGTTGACCTCAGCGTGACGCTGTCGTCCAGACAGTGTACTGGGTCAGAGGTCATACGTGAAGGGGAGAGCCAGTATGCTGACGTATTTCAGCTGAGAGCCAGTTATAATGTGTACAAGGCTGTGTACGCCATCGCCTACGCCATACAGGATATGATGGCCTGTCGACCAGGGGACGGAGTCTTTAATGGTGGACAGTGCCCTGATATCAGGAAGCTTCAGCCCAGCCAGATTGTTCATTACCTGAGGGGAGTGAACTTCAGTACTCCTGTGGGGGAATCTTTCCACTTCGACATTAATGGTGATCCGCCTGCCTCTTATGACATCATCAACTGGCATGTGACCCCCGAGGGGACGGCAGAGTTTGTCCAGGTCGGACATTTTCTGTCCTCTGAGGGATCGGACGACCAGTTTCACATCGACATGGATAAAGTGGTGTGGGGTGGGGGCAGCGGAAATGAGGTCCCTGTGTCTGTATGCAGTGCTGACTGTCCCCCTGGTACCAGGCATGCGGTACAGAAGGGGAGGCCTGTGTGCTGCTTTGACTGTCTGTCCTGTGCTGAGGGAGAGATCAGcaacacaacagGGTCAGTTGAGTGTATTAGGTGTCCGGAGCGGTTCTGGTCCAACCCTGATCGTACGGCCTGCATCCCCCAGCTGGTGGACTTCCTCTCCTACAGCGACACCATGGGCGTCATCCTGTCTGTCATCTCAGTTTCCGGGGCAACACTCACAGCCGGTGCCCTGGCCACCTTCCTCTACCATCGTCACACGGCCCTGGTGAAAGCCAACAACTCTGAGCTCAGCTTCCTGCTCCTTCTGTCCCTCAAGCTCTGCTTCCTGTGTGCTCTGGTTTTCATTGGCCAGCCGAAGCCGTGGACGTGCATGCTGAGACACACCCTGTTTGGTATAAGTTTTGTGTTCTGCATCTCCTGTCTGCTCAGCAGGactgtggtggtgctggtggcCTTCAGGGCCACTCTGCCTGGAGAGAACCTGATGAGATACTTCAGCCCCACCCAGCAAAGGATGGGTATCTCACTCTGCACACTCATCCAGGTGCTGATCTGTGTATTGTGGCTGGCCTTAGCTCCACCCCGACCTGctgagaggggggacagagagggtcgGGGGCCGAGGGTCGTCCTGGAGTGTGAGGTGGGTTCTGTGGTCGGCTTCTCTCTGGTGCTGGGCTACATCGGCCTGCTGGCCTCCCTCTGTCTACTCTTAGCCTTCCTGGCCAGGAAACTCCCAGACAACTTCAACGAGGCCAAGTTCATCACGTTCAGCATGCTGATCTTCTGTGCCGTGTGGATCTCCTTCATCCCTGCCTACGTCAGCTCTCCTGGGAAGTACACAGTAGCTGTAGAGATCTTTGCCATCCTGGCCTCCAGCTTTgggctgctgttctgtctgtttgcTCCAAAGTGTTACATCATCCTTCTGAGACCAGAGAGAAACACCAAGAAACACATGATGTCCAAATagaaaccaccaagaaacacatgatgtccaattagaaaccaccaagaaacacatgatgtccaaatagaaaccaccaagaaacacatgatgtccaattagaaaccaccaagaaacacatgaTGTCCAATTAGAAACAACCAAGAAACACATGATGTCCAATTAGAAACCATTAAGAAACACATGATGGACAAATATTAACTTACACTTACTCAAATCGGGATTTCAACAGGGGAATGTCCATTCTCTTTTGAAACATTAATTTCCTGCAATACCTTCACTATATTACTTTGTTAAT

Function

NR:

description
extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965616.1 True 2902 mRNA 0.53 12 41267775 41274291

Neighbor

gene id symbol gene type direction distance location
LOC110508053 LOC106581466 coding downstream 19953 41242573 ~ 41247822 (-)
LOC110507278 LOC106581466 coding downstream 40472 41223015 ~ 41227303 (-)
LOC110508052 LOC106581482 coding downstream 122698 41140451 ~ 41145077 (-)
LOC110507230 LOC106581337 coding downstream 126981 41129677 ~ 41140794 (-)
LOC110508048 LOC106581470 coding downstream 147757 41116294 ~ 41120018 (-)
LOC110507280 LOC106581477 coding upstream 8462 41282753 ~ 41287429 (-)
LOC110507281 LOC106581467 coding upstream 34885 41309176 ~ 41313710 (-)
LOC110508054 LOC106613305 coding upstream 88271 41362562 ~ 41413292 (-)
LOC118944786 LOC106581464 coding upstream 299120 41573411 ~ 41680789 (-)
LOC110508065 LOC106581500 coding upstream 532417 41806708 ~ 41809013 (-)
G2083242 NA non-coding downstream 49577 41217981 ~ 41218198 (-)
G2083241 NA non-coding downstream 50015 41217561 ~ 41217760 (-)
G2083218 NA non-coding downstream 68471 41198986 ~ 41199304 (-)
G2083189 NA non-coding downstream 97307 41170140 ~ 41170468 (-)
G2083355 NA non-coding upstream 48190 41322481 ~ 41322711 (-)
G2083360 NA non-coding upstream 51515 41325806 ~ 41326015 (-)
G2083364 NA non-coding upstream 53994 41328285 ~ 41328505 (-)
G2083368 NA non-coding upstream 57516 41331807 ~ 41332023 (-)
LOC110508045 LOC106581475 other downstream 292568 40967894 ~ 40977862 (-)
LOC110507273 LOC106581487 other downstream 386538 40878111 ~ 40883459 (-)
LOC110508038 LOC106581456 other downstream 646081 40620620 ~ 40654523 (-)
lekr1 LOC106581448 other downstream 1080210 39984103 ~ 40190414 (-)
G2082006 NA other downstream 1594322 39672732 ~ 39681547 (-)
G2083443 NA other upstream 149248 41423539 ~ 41424040 (-)
G2084740 LOC106613316 other upstream 1510336 42784627 ~ 42785035 (-)
G2085726 NA other upstream 2637869 43912160 ~ 43912680 (-)
G2086783 NA other upstream 3646618 44920909 ~ 44921312 (-)

Expression


Co-expression Network