LOC110507280 (LOC106581477)


Basic Information

Item Value
gene id LOC110507280
gene name LOC106581477
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 41282753 ~ 41287429 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587164.2
TCTCCCAGTCTTCGgccttgtctctctccaggtgatgAGCCTGTGTGGTTGGCTGTGGCTGCTCTACTGTCTCCATGTCCCTGGGTCTGTCTGGGGTCTGGATGGCGGTGGAGAGGGGGCTTGTCGGCTGATAGCTAAGCCCATCTCGGGCAGTGTTTATCAGGCAGGAGATGTGGTCATTGGGGGCCTGTTCCCCATCCATGTGGAAGCCCCTCTGCCAGAGCAGGAGTTCAGGAGCATTAAGGGAAATTCTACCTGTACAATTTTCAAACAGCGTGCTTACCGCTGGCTCCAGACTATGATCTTTGCTGTGGAGGAGATTAACCGTGACCCAGCCCTCCTGCCTAACCTCACCCTGGGGTTCCTGGCTGCTGACACATGCCGGTCAGATGGCACCACCCTGGGGGCAGCCCTAGCCATGGTGACCGGCAAGGAGGCCTCCGTGGTGGGCACAGAGTGTGGCACTACCCCTGAGGTTCCCGTCATCATCGGGGATCCCCACTCCTCAGCTTCCATCGTGGTGGCACAGACCCTCGGGCCGTTTGATTTACCCATGGTGAGTTACTTTGCCACCTGTGCGTGTTTGAGTGACACCTGGAGGTACCCCTCATTCTTCCGTACAGTACCCAGCGATGCCTTCCAGGCTCGGGGCATGGCCAAGCTGCTGCGTCAGATGGGCTGGGTGTGGGTGGGACTGGTGTCAGAGGATGATGACTATGGCAAGTTTGGGGTTCAGCTGCTTCTCCAAGAGCTCCAGGGATCTGGGGTGTGTGTCGCCTACTCTGAGGTCCTCCCCAAGTTACCGTCTAAGAGAAAGATCAGGCACATTGCGGACACCATCAGAGGATCTACTGCCAGAGTGGTGGTGGCATTTGTAGGATTCACGGGTCATGCAGAGGCCCTGATGGAAGAGGTTGTCCGTCAGAACATTACAGATAAGCAGTGGATTGCCTCAGAGGCCTGGGTCACCTACTCTACTATCGCCGCCCCGACAAACATGCCCTCTTTTGCCGGGACAATCGGTTTTGCCCTGAAGAAAGCTGACATTCCCGGCCTGGGGCCTTTCCTAACACGCCTCCATCCAGACGGGGATTACCAGAAGTCCGACCCCTTCCTGAGGGAATTGTGGGAGGAGATGTTTGGGTGTTCTCTGGGGGTAGACCTCAGTGTGACGCTGTCATCCAGGCGACAGTGTACTGGGTCAGAGGTCATACGTGAGGGGGAGAGCCAGTATGCTGATGTGTCTCAACTGAGAGGCAGCTATAATGTGTACAAGGCTGTGTACGCCATCGCCTACGCCATACAGGATATGATGGCCTGTCGACCAGGGGACGGAGTCTTTAATGGTGGACAGTGCCCTGATATCAGGAACCTTCAGCCCAGCCAGATTGTTCATTACCTGAGGGGAGTGAACTTCAGTACTCCTGTGGGGGAATCTTTCCACTTCGACATTAATGGTGATCCGCCTGCCTCTTATGACATCATCAACTGGCATGTGACCCCCGAGGGGACGGCAGAGTTTGTCCAGGTCGGACATTTTCTGTCCTCTGAGGGATCGGACGACCAGTTTCACATCGACATGGATAAAGTGGTGTGGGGTGGGGGCAGCGGAGATGAGGTCCTTGTGTCTGTATGCAGTGCTGACTGTCCCCCTGGTACCAGGCATGCGGTACAGAAGGGGAGGCCTGTGTGCTGCTTTGACTGTCTGTCCTGTGCTGAGGGAGAGATCAGcaacacaacagGGTCAGTTGAGTGTATTAGGTGTCCAGAGCGGTTCTGGTCCAACCCTGATCGTACGGCCTGCATCCCCCAGCTGGTGGACTTCCTCTCCTACAGCGACACCATGGGCGTCATCCTGTCTGTCATCTCAGTTTCCGGGGCAACACTCACAGCCGGTGCCCTGGCCACCTTCCTCTACCACCGTCACACGGCCCTGGTGAAGGCCAACAACTCTGAGCTCAGCTTCCTGCTCCTTCTGTCGCTCAAGCTCTGCTTCCTGTGTGCTCTCGTTTTCATTGGCCAGCCGAAGCCGTGGACGTGCATGCTGAGACACACCCTGTTTGGTATAAGTTTTGTGTTCTGCATCTCCTGTCTGCTCAGCAGGactgtggtggtgctggtggcCTTCAGGGCCACTCTGCCTGGAGAGAACCTGATGAGATACTTCAGCCCCACCCAGCAGAGGATGGGTATCTCACTCTGCACACTCATCCAGGTGCTGATCTGTGTGCTGTGGCTGGCCTTAGCTCCACCCCGACCTGCTgagaggaggggcagagagggtcggGGCCCGAGGGTCGTCCTGGAGTGTGAAGTGGGCTCTGTGGTCGGCTTCTCTCTGGTGCTGGGCTACATCGGCCTTCTGGCCTCCCTCTGTCTCATTTTAGCCTTCCTGGCCAGGAAACTCCCAGACAACTTCAACGAGGCCAAGTTCATCACGTTCAGCATGCTGATCTTCTGTGCCGTGTGGATCTCCTTCATCCCTGCCTACGTCAGCTCTCCTGGGAAGTACACAGTAGCTGTAGAGATCTTTGCCATCCTGGCCTCCAGCTTTgggctgctgttctgtctgtttgcTCCAAAGTGTTACATCATCCTTCTGAGACCAGAGAGAAACACCAAGAAACACATGATGTCCAAATagaaaccaccaagaaacacacgatgtccaattagaaaccaccaagaaatacatgatgtccaattagaaaccaccaagaaacacatgatgtccaattagaaaccaccaagaaacacatgatgtccaattagataccaccaagaaacacatgatgtccaattagaaaccaccaagaaacacatgatgtccaattagaaaccaccaagaaagaaatcatgtccaattagaAACAACCAAGAAACACATGATGTCCAATTAGAAACTACCAAGAAATA

Function

NR:

description
extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587164.2 True 2916 mRNA 0.54 11 41282753 41287429

Neighbor

gene id symbol gene type direction distance location
LOC110507279 LOC106581477 coding downstream 8462 41267775 ~ 41274291 (-)
LOC110508053 LOC106581466 coding downstream 34931 41242573 ~ 41247822 (-)
LOC110507278 LOC106581466 coding downstream 55450 41223015 ~ 41227303 (-)
LOC110508052 LOC106581482 coding downstream 137676 41140451 ~ 41145077 (-)
LOC110507230 LOC106581337 coding downstream 141959 41129677 ~ 41140794 (-)
LOC110507281 LOC106581467 coding upstream 21747 41309176 ~ 41313710 (-)
LOC110508054 LOC106613305 coding upstream 75133 41362562 ~ 41413292 (-)
LOC118944786 LOC106581464 coding upstream 285982 41573411 ~ 41680789 (-)
LOC110508065 LOC106581500 coding upstream 519279 41806708 ~ 41809013 (-)
LOC110508063 LOC106581498 coding upstream 639488 41926917 ~ 42107164 (-)
G2083242 NA non-coding downstream 64555 41217981 ~ 41218198 (-)
G2083241 NA non-coding downstream 64993 41217561 ~ 41217760 (-)
G2083218 NA non-coding downstream 83449 41198986 ~ 41199304 (-)
G2083189 NA non-coding downstream 112285 41170140 ~ 41170468 (-)
G2083355 NA non-coding upstream 35052 41322481 ~ 41322711 (-)
G2083360 NA non-coding upstream 38377 41325806 ~ 41326015 (-)
G2083364 NA non-coding upstream 40856 41328285 ~ 41328505 (-)
G2083368 NA non-coding upstream 44378 41331807 ~ 41332023 (-)
LOC110508045 LOC106581475 other downstream 307546 40967894 ~ 40977862 (-)
LOC110507273 LOC106581487 other downstream 401516 40878111 ~ 40883459 (-)
LOC110508038 LOC106581456 other downstream 661059 40620620 ~ 40654523 (-)
lekr1 LOC106581448 other downstream 1095188 39984103 ~ 40190414 (-)
G2082006 NA other downstream 1609300 39672732 ~ 39681547 (-)
G2083443 NA other upstream 136110 41423539 ~ 41424040 (-)
G2084740 LOC106613316 other upstream 1497198 42784627 ~ 42785035 (-)
G2085726 NA other upstream 2624731 43912160 ~ 43912680 (-)
G2086783 NA other upstream 3633480 44920909 ~ 44921312 (-)

Expression


Co-expression Network