LOC118944772 (LOC106581517)


Basic Information

Item Value
gene id LOC118944772
gene name LOC106581517
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42647144 ~ 42649901 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965667.1
CCGAGGGACAGCGTGTTTACTTGTGCCATCCTGAAAGAGCCTCTCAGGGTGACAAAGACCCCATTCACCGGTAACCGGAGCTCGCACGCTGCCTCATCAACTATTTGAGCAGGATGGTGTTTAGGCCTATCTGTTTGCGACCACATTAACAACACAGCTCAGGAAATGTCGGTAACATATGATTAAAGTCTGGTGGCGGATGTCCTAATCTCGCCTGACAGAGTAGAGACAAAGAGACTGTAGGCCTAACTTAAATGTTTTCCTGAGACTGGGCCGACtggtttttttccccctcatagcGCAGGGAGGTAGCAGGTGTGAGGAAGGAGGACCTTAACTTTTGTCCTTGTCATCCTAGCCCAGGTGGAAGAGATCATTATTCTGAGTTCAACGGAGAGGAGAATGTGACAGGGCAGTGGACGTTAAGGTTCTAGAACTTCTGGAGTCAATGACAAAAGGTGCATGAGTAGTTAATGGATATATAAGGACTGGAAGTCTGACGGGATTTCATGGAGCTAACTCAGTGGGCAACTCAGTGGATAACAGGGGGTCGTTCTACCTTTCACAGAGCCGGTAAGCGCCCCAGTCTGTGTCGCTGCAAAACATTTCGAGTGGCTGTTCTGAGAACATCATGCTCGTGGGTGTGTTTCACCGCTTTCGTCTGTGGACTCTTTCTCCTCCTCGGAGTGTGTTTTCTCAATCTCTTTGACCCACGactccaacccctccctctcactggaGTGGAGCCCAGAGATGTCACCCTTCTGTTGTGGACGCACCCCTTCGGCCGTTACCGCAGACTGCCGGACTGTGAGGCGCGCTTTGGGATCCGTGGGTGCGTACTGACCGACGACCGACGCACGTACCCTGGGGCTGACGCCATCATCATGCACCACCGTGAGATAATGACCAACGCCACGGCGCTCCCGTCTGACCCACGACCCCGTGGCCAGAAGTGGATCTGGATGAATTTTGAGTCCCCGTCTCACACTCGTGGCCTGCAGCAGTTCGAGGGCTTGTTCAACCTCACCATGACCTACCGTGCAGATTCAGACATCTTCCTCCCCTACGGCTACCTGGTGACCCGCCTTCACCCTCACGCCAACGCCCCCCACACACGCCCCCGACGGCCCCACCTACTGGCTTGGGTCATCAGTAACTGGTCGGAGTCGCAGGCCCGCGTGGCGTATTACCGTCGGCTGGTTAACTACGTTGACGTGGATGTGTTCGGGCGTGCAGGCGTGCCACTGCCAGAGGACAGcactgtggtgcgcacggtgagGCGTTACCTGTTTTATCTGGCGTTGGAGAACTCCCAGCACCCCGACTACATCACCGAGAAGCTGTGGAACTCCTTACTGGCCGGGGCCGTTCCTGTAGTTCTCGGGCCGCCGCGGGAAAACTACGAACGCTTCCTCCCCCATGATGCCTTCATTCATGTGGACGACTTCTCCTCTCCCCGCCTGCTCGCCCAATACCTGATGCTGCTGCGCCGGAGCCCCACCCTCCTGCAGAGACACCTGGCTTGGAGGAGGAGCTACAGCGTGCACCTGACCGCTTTCTGGGCGGAGCATTACTGCACAGCATGTCGCGTCGTGCGGAACCACAGTCTCCGGACTGACACCATCACCAACCTTCAGCGCTGGTTTGAGTCCTGACCTCAGTGTGGAACCACAGTCTCCGGACTGACACCATCACCAACCTTCAGCGCTGGTTTGAGTCCTGACCTCAGTGTGGAACCACAGTCTCCGGACTGACACCATCACCAACCTTCAGCGCTGGTTTGAGTCCTGACCTCAGTGTGGAACCACAGTCTCCAGACTGACACCATCACCAACCTTCAGCGCTGGTTTGAGTCCTGACCTCAGTGTGGAACCACAGACTCCGGACTAACACCATCACCAACCTTCAGCGCTGGTTTGAGTCCTGACCTCAGTGTGGAACCACAGTCTCCGGACTGACACCATCACCAACCTTCAGCGCTGGTTTGAGTCCTGACCTCAGTGTGGAACCACAGTCTCCGGACTGACACCATCACCAACCTTCAGCGCTGGTTTGAGTCCTGACCTCAGTGTGGAACCACAGACTCCGGACTGACACCATCACCAACCTTCAGCGCTGGTTTGAGTCCTGACCTCAGTGTGGAACCACAGACTCCGGACTGACACCATCACCAACCTTCAGCGCTGGTTTGAGTCCTGACATCGGACTCCTTTTTGACCTTCCAATATGTGGTGACTACTATGAACATGATTGGTCAGATATCTAGCCACAACCCAGTCTGTAGCAGGGAATCTATAGAAACTCTCTTCAACACCATTCAGTAAACAGGAAGAAACACTTCATATTTATTGAACATTATTGAACTGGGATTCACATGtctgtcatttttgttgttgttattagtcagtGTTCAGTAGTGTTGTGAAGTGAGTTAGACTGTATAAGAAACAGAGATATTGCTCTCATCAGCGTGTTGTGTGGATTGTTAAGACGGGCTGCTTATGGAGGCCTTAAACTTCCTTAAACTTAAGGACGGGACAGTGGGATGGGTTCAGCATCATGGCCATGTTAACCCCAGTAGCCTTGATACTGCCCAGACATTACCAGGTGACCAGCTGCTACTTATCCCACACCACTAGACATGGGCAATGTCAACCCCAGGATAAGCCACAACACCAACCCCCGGGGCTCCTGTTCCACCTCCAAAGAAGAtacctgtgacacacacacacacacacacacacacacacacaca
>TU2383626
CTGACCTCAGTGTGGAACCACAGTCTCCGGACTGACACCATCACCAACCTTCAGCGCTGGTTTGAGTCCTGACCTCAGTGTGGAACCACAGACTCCGGACTGACACCATCACCAACCTTCAGCGCTGGTTTGAGTCCTGACCTCAGTGTGGAACCACAGACTCCGGACTGACACCATCACCAACCTTCAGCGCTGGTTTGAGTCCTGACATC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965667.1 False 2758 mRNA 0.54 1 42647144 42649901
TU2383626 True 212 lncRNA 0.56 1 42647696 42647907
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Neighbor

gene id symbol gene type direction distance location
LOC110508058 LOC106581494 coding downstream 82564 42561570 ~ 42564580 (-)
neu4 LOC106581489 coding downstream 106804 42516527 ~ 42540340 (-)
aadac LOC106613299 coding downstream 361599 42262030 ~ 42285545 (-)
LOC110508063 LOC106581498 coding downstream 539980 41926917 ~ 42107164 (-)
LOC110508065 LOC106581500 coding downstream 838131 41806708 ~ 41809013 (-)
LOC110519585 LOC106581519 coding upstream 645910 43295811 ~ 43529347 (-)
LOC110508094 tnfaip1 coding upstream 885654 43535555 ~ 43549204 (-)
tmem97 tmem97 coding upstream 906675 43556576 ~ 43558533 (-)
LOC110508089 LOC106581526 coding upstream 1087169 43737070 ~ 43762876 (-)
LOC110508088 LOC106581525 coding upstream 1119339 43769240 ~ 43783275 (-)
G2084495 NA non-coding downstream 4893 42641938 ~ 42642251 (-)
G2084484 NA non-coding downstream 17908 42627722 ~ 42629236 (-)
G2084481 NA non-coding downstream 26527 42620195 ~ 42620617 (-)
G2084468 NA non-coding downstream 66525 42580066 ~ 42580619 (-)
G2084436 NA non-coding downstream 90846 42556070 ~ 42556298 (-)
G2084505 NA non-coding upstream 33 42649934 ~ 42650551 (-)
G2084685 NA non-coding upstream 16214 42666115 ~ 42666373 (-)
G2084715 NA non-coding upstream 66106 42716007 ~ 42716300 (-)
G2084725 NA non-coding upstream 93590 42743491 ~ 42744263 (-)
G2084690 NA non-coding upstream 167052 42816953 ~ 42817378 (-)
LOC118944786 LOC106581464 other downstream 966452 41573411 ~ 41680789 (-)
G2083443 NA other downstream 1223104 41423539 ~ 41424040 (-)
LOC110508045 LOC106581475 other downstream 1671937 40967894 ~ 40977862 (-)
LOC110507273 LOC106581487 other downstream 1765907 40878111 ~ 40883459 (-)
LOC110508038 LOC106581456 other downstream 2025450 40620620 ~ 40654523 (-)
G2084740 LOC106613316 other upstream 134726 42784627 ~ 42785035 (-)
G2085726 NA other upstream 1262259 43912160 ~ 43912680 (-)
G2086783 NA other upstream 2271008 44920909 ~ 44921312 (-)
G2087090 LOC106593344 other upstream 2880455 45530356 ~ 45530780 (-)
G2087288 NA other upstream 3147169 45797070 ~ 45798330 (-)

Expression

LOC118944772(LOC106581517) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC118944772(LOC106581517) Expression in each Bioproject

Bar chart with 16 bars.
LOC118944772(LOC106581517) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
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Co-expression Network