pgr (LOC100846969)


Basic Information

Item Value
gene id pgr
gene name LOC100846969
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49201448 ~ 49266635 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965366.1
TCTTTGCACCAAGAGACACCACCCACTCTAGTCTCCTCGCCGACTGACAGGGACTCTGACTGACTGTCGTCTTCGTGATTTCTGTAGCTTTGACAACAGAATGGAAAATGAACACACAACAGACAGGATGGACACAGCGAACACATTGAGCTCAGACGTCACAGACTCCAGTAAAAGAGTAAGTTATTTGATTGAGAAGTATAAAGATGTAGGATTTGGTCAGCCTCGGAAATTCTCTAAGGAGCCACAGTCTCAAGTCTGCATGTCCTCCGTAGTGCGTAGTTTTGGAAACGTTGGCACTTTGTGCGCTGCGCCTCCTGGCTCAAGCAACAACAGTACCATGTTCAAAGACTGTACGGTCAGAGATAACGCATCACTTATCAATAAAGCGTTTTATGACCGCTCTGACCCTGTGCGCTGGACAGAGGTGCGTGGTATAGAGGGAGTGAAGGATTCCACGTTACCGCAGCCGATCCCAACAGTAACTCATGAAAGTTTGCAGAGAGCGGCTACGAACATGATATCGACACCCAGTTCAACCACAGCCACCGGGGTCTGTAGGATCATCAAAGATGAGAAGGAGCCGTCACTAATCATGGAAACACCGTGTCCCGATTTTGACCTAACGGCCAATATCCCTACCCTCGAGAGCTGTTACGACAGCGAGAGGAAACAACAACAGTTAGGTTTTCTGGATGATTCCGCAGCGTCTTTCCCCACCTCCGCGCCTGGACAACAGCACCAACAAGTACTATTGGACTGTTCACCGAACTTTCTAGTCGACTTGAATCAGAACGACCAGATGTCGACGGTTCCCCAGGTCCGTGCAGACTCACGCGGTGTTCCCTTTCCTACTCATCCCGGTAAGGGCATGCTGAGTTTTGATGTAATGAGCAGTAACGGACAGGGTCCACAGCAGCATTTGATGATTTATAAGAGTGAAATGCCCAGATGGTCCATTCAGACCTCTCCTACTCATTCCTCGTTTTGGTGCCAGTCCAGCGGGGTCTCCGAGGACCAGTACCCACACCATGGCTACTCCTCCCCGGATGGAATTCACACCTCAGCCCTGCTCCAGAGGTCCCCAACCTATACAGGATATGGCGGTGTTCCACCCCAGAGACTATGTATGATCTGTGGAGATGAGGCCTCAGGGTGTCACTATGGGGTCCTCACATGTGGAAGCTGCAAAGTGTTCTTTAAACGAGCGGTCGAAGGACATCATAACTATCTCTGTGCCGGTCGAAATGACTGCATCGTGGATAAAATACGGAGAAAGAATTGTCCTGCGTGTCGCCTGAGGAAGTGCTACCAAGCTGGGATGATGCTCGGAGGGCGGAAGCTGAAGCGTTTTGGGGCCCTGAAGGCAGGTCCAGCCTTGATGTTCCAGGGGCCCTTATCAGCCCTGGGAGATGGTCTGGCCCCAGCCTTGATGTTCCAGGGGCCCTTGTCAGCCCTGGGGGATGGTCAGACCCTGGCCTCTCTACCCTGCATGCCTGGCCTCAACGAGCTGCAGCTCTCCCCTCAGATCATCAGCATTCTGGAGAGCATTGAGCCTGAGGTGGTGTACTCTGGCTATGACAACTCCCAGCCTGACAtgccacacctcctcctcaacaGTCTCAACAGACTGTGCGATAGACAGCTGTTGTGGATCGTCCGGTGGTCCAAGTCCCTGCCAGGGTTCCGTAGCCTCCACATCAACGACCAGATGACACTCATCCAATACTCCTGGATGAACCTAATGGTGTTCTCTCTGGGCTGGAGATCTTTCCAGAATGTCACCAGTGAATACTTATACTTCGCTCCTGATCTTATCCTTAGCCAGGATCGTATGAGGAGATCTCCCATATATGATCTGTGTCTGGCCATGCAGTTCATTCCTCAGGAGTTTACCAGCCTCCAAGTCACCAAAGAGGAGTTCCTCTGTATGAAAGCCATCATGATTCTCAACACTGtTCCATTGGAGGGTTTAAAGAGCCAGGCCCAGTTTGAGGAGATGAGACAGAACTACATTCGGGAGCTGACCAAGGCTATCCATCTGAAGGAGAGAGGCATGGTGGCCTCCTCTCAACGCTTCTATCATCTCACCAAGCTCATGGATGCCATGCATGAGATTGTGAAGAAAGTGAACCTGTACTGTCTTAGTACCTACATCCAGGCTGACGCCATGAAGGTTGAGTTCCCTGAAATGATGTCAGAGGTCATCTCCTCCCAGCTCCCCAAGGTCCTGGCCGGCATGGTCAAGACCCTCCTCTTCCACGCCAAGTGACCAATCACAGGAGACAACCAAACCTGCACCGCGCAAAGCACCATGGAAGAATAGAATATACCCAAAGAGCAAGAGTTGAATAAATATTTTATAAACGTCatcatatatcaaatcaaatatcGACCAAAATGTTATGTTGATTTGAAAATAGGTCTTTGTCCGGTGGGTGTATCATATCTTTGAAACTAAGACAATTTAAGTTAATCGTAAAGGTTTTGGGGAGGTGATATTTGGACCAAGTTAAACATGAAGGTTTTGGGGAGGTGATATTTGGACCAAGTTAAACATGAAGGTTTTGGGGAGGTGATATTTGGACTAAGTCAAAATGTGAAGATTTTGGGGGGGAATTAGTTGAGTTTATATTTGTGGCAGAATGAGTCCTTCTCCAAGGTCTGTTTGCCCTGTCTGAAGTCCAATAGTCCTGCCAGCAGGCAGATATGTCCTCCAGTCAGACCTCTTAGAACTGTGATTCCTTCTCCAAGGTCTGTCTGCCCTGTCTGAAGTCCAATAGTCCAGATATGTCCTCCAGTCAGACCTCTGTGGTGAATCCATCAAAGATACTGTAACGGTGCCTCCCTTCAATACACTCTTATCTTTTGAGGTGGTGGAATTTTATATATAGAAGTTGTGTTAGCATTTTTAATTTGTGAGAATTACTGTTTTGCTAGACTTGTAAGAGAGCTAGGTttacgtcccaaattgcaccctattcccaacagtgcactgcttttgaccagagtgcCATGggctctggttgaaagtagtgcactatgtagggaatagggtgctgtttgagacGCAGCCTTAAAACTGCTATACCAAGTTTTGCTTTTTGCGTTAGTTTTCAGTGACATACATGTCACACTCCCTGCTTCATGGCTGGGCAGGCATTTATATATCTCAAGTTACGCAAGTTACACAAAATACACAATGCCATTCTATTTCATGTACCATTAAATTACATAActactgtatttttttaaaggGAGCACAAGGGGAATGATGTTATTTCAATGCCATTGCTATTCGCAGAAATGTGGAAAAATAAATGTTCCATTGCTCTGCGATAAGGAAATACCATCTGAACCTCCTCCCCGATCCTCAAGATAAAGACATATAGAGCGAGAGACagataaaaagagagaaagaggagaggagaaataaagagagggaggagagcgatagtgggaggaaagagagaataagggaggaaaaagagagagaggagagagataaaggcaggaaaaagagagatgagagagagggagggaggagagagataaagagagagtagaggataaatagagaggaaggaaagga

Function

NR:

description
nuclear progesterone receptor

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0050794 regulation of cellular process biological_process

KEGG:

id description
K08556 PGR, NR3C3; progesterone receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965366.1 True 3592 mRNA 0.48 9 49201448 49266635

Neighbor

gene id symbol gene type direction distance location
trpc6b LOC106581586 coding upstream 15335 49089883 ~ 49186113 (+)
zmp:0000001236 LOC106581583 coding upstream 426767 48633372 ~ 48774681 (+)
gab2 gab2 coding upstream 577000 48460449 ~ 48624448 (+)
nars2 nars2 coding upstream 743009 48401253 ~ 48458439 (+)
tenm4 tenm4 coding upstream 882363 47640597 ~ 48319085 (+)
LOC118944717 NA coding downstream 56378 49323013 ~ 49323866 (+)
LOC110508133 fbxo40 coding downstream 1199248 50465883 ~ 50476608 (+)
LOC110507254 nectin1 coding downstream 1399084 50665719 ~ 50850459 (+)
LOC110508131 LOC106613338 coding downstream 2206885 51473520 ~ 51510450 (+)
G2090037 NA non-coding upstream 32114 49167441 ~ 49169334 (+)
G2090036 NA non-coding upstream 38283 49162964 ~ 49163165 (+)
G2090034 NA non-coding upstream 47575 49147834 ~ 49153873 (+)
G2090031 NA non-coding upstream 60394 49140770 ~ 49141054 (+)
G2090093 NA non-coding downstream 49993 49316628 ~ 49317091 (+)
G2090100 NA non-coding downstream 55218 49321853 ~ 49322105 (+)
G2090102 NA non-coding downstream 66528 49333163 ~ 49333394 (+)
G2090104 NA non-coding downstream 67640 49334275 ~ 49334820 (+)
G2090105 NA non-coding downstream 68253 49334888 ~ 49337253 (+)
G2089935 NA other upstream 142553 49058005 ~ 49058895 (+)
G2089906 NA other upstream 274156 48926975 ~ 48927292 (+)
G2089124 NA other upstream 745962 48432478 ~ 48455486 (+)
G2089020 NA other upstream 1010086 48188209 ~ 48191362 (+)
G2088870 NA other upstream 1336619 47854106 ~ 47864829 (+)
G2090091 LOC106581584 other downstream 46108 49312743 ~ 49316226 (+)
G2090103 NA other downstream 66812 49333447 ~ 49334183 (+)
G2090508 NA other downstream 518492 49782101 ~ 49788805 (+)
G2090638 NA other downstream 815428 50082063 ~ 50087691 (+)

Expression


Co-expression Network