G2040157


Basic Information

Item Value
gene id G2040157
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 1554605 ~ 1556521 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2333959
ctacaggaatagGAGTGCCAAACACGCCCcaattcacatcgacggggctgtagtggagcgggtcgagagcttcaagttcctcggtatcccagtacattactggggcctatcttcctgccatccaggacctctatactaggaggtgtcagaggaaggccccaaaaatggtcatagactcaagccacccaagtcatagactgttctctctgctacagcacggcaagcggtaccagatcaccaagtctatgtccaaaaggctccttaacagcttatatccctaagccataagactgctgaacagttaatcaaatggctacctagactatttgcattgaccccccctttTTTTACgttgctgcttctcactgtttattatctatgtatagtcactttacccctacctacatgtacatattaccttgactaacctgtacccctgcacattgactcggtaccagtaacccctgtatatagcctcatatTATTTTCTTAACGCTCAGTTTCTTAAAACCtcattgttggttaaggcttgttagtaagcatttcacagtaaggtctactacacctgttgtatttggggcATGTGACATTTACAATTTGATCATCTCTGAACCACTCACATGAAATGAGCTTCGGTGCCCCAAGTTAACAGTGACTTGGGGATTTTGTCTAGGATCTCAAAAACTGTCCCAGACACGTGTGAGCGGTTCAGAGACGATCAAATTGTAAATGTGCCTACATGCACCTTATTCGCACATAAAGAAGCCAAAACCTATGTAATGACACTAcatgacaaaagtatgtggacacgtgctcgtctaacatctcattccaaaatcatgggcattaatatggagttggtcccccctttgctgctgtaacaacctccactcttctgggaaggctttgcaCGAGATGTTGTAACATCGCTGCtatcacgttctgaccataggtcttgtgtgttttccttgttttagtgttggtcaggacgtgagctgggtgggcattctatgttgtgtgtctagtttgtctgtttctgtgtttggcctgatatggttctcaatcagaggcaggtgttagtcattgtctctgattgggaaccatatttaggtagcctgttttgtgggtgattatttcctgtctttgttgcaccagatagggctgttttggtttttcacgtttcttgttttgtatattgttcagCTTTCATTAAGGATGTATAAAGGTAACCactctgcattttggtcctcctctccttcccaggaagaatcccgttacagctgcagggacttgtttccattcagcgaGAAGAGCATTAGTAAGGTTGTGCGATTACAAACGTaacaattggcactatgcattcggcaggtagcgttctcctggcatctggtAAACCCAGactctgccagatggtgaaacgtgattcatcacgcCAAAGAATTtgtttccattgctccagagtccaatggcggcgagctttacaccactccagccgacgcttggcattgcgcatagtgatcttaggcttgcgaTGCACATCATTAATGTGCATCAGACAAGTGACTTGAATGTTATACATTGTTTGTCAATTATTTTCCAGCAGTTTCTCTTTAGGGTTGTTAAATatgttttattacattttagCTTGTTTATAGTGTTACCATCTACACAGATCTCAGATTATtcacacaatttgatttgatgtggtcATTGTAGGCCGAACGCGGGACTTGCTCTCCCTCTCATACAGTATGGTCACATTTCAGGCCAACTACATCGCATCGACCCGTGGTCGATTGATTTGTACAGTCAGGCATCAGATTGCatatcatacagtgccttgcgaaggtattcggcccccttgaac
>TU2333957
TTAAATatgttttattacattttagCTTGTTTATAGTGTTACCATCTACACAGATCTCAGATTATtcacacaatttgatttgatgtggtcATTGTAGGCCGAACGCGGGACTTGCTCTCCCTCTCATACAGTATGGTCACATTTCAGGCCAACTACATCGCATCGACCCGTGGTCGATTGATTTGTACAGTCAGGCATCAGATTGCatatcatacagtgccttgcgaaggtattcggcccccttgaac
>TU2333958
TTAAATatgttttattacattttagCTTGTTTATAGTGTTACCATCTACACAGATCTCAGATTATtcacacaatttgatttgatgtggtcATTGTAGGCCGAACGCGGGACTTGCTCTCCCTCTCATACAGTATGGTCACATTTCAGGCCAACTACATCGCATCGACCCGTGGTCGATTGATTTGTACAGTCAGGCATCAGATTGCatatcatacagtgccttgcgaaggtattcggcccccttgaactttgcaaccttttgccacatttcaggcttcaaacataaagatataaaact

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2333959 False 1867 lncRNA 0.44 1 1554605 1556471
TU2333957 False 248 lncRNA 0.42 1 1556224 1556471
TU2333958 True 298 lncRNA 0.41 1 1556224 1556521

Neighbor

gene id symbol gene type direction distance location
gmnc gmnc coding upstream 252113 1290585 ~ 1302492 (+)
LOC110507306 LOC106579799 coding upstream 430451 1122000 ~ 1124154 (+)
LOC110507305 LOC106579784 coding upstream 462906 1075178 ~ 1091699 (+)
LOC110507304 NA coding upstream 512099 1021095 ~ 1042506 (+)
rhbdd1 rhbdd1 coding upstream 693211 831698 ~ 861394 (+)
LOC110507313 LOC106579790 coding downstream 24159 1580680 ~ 1601430 (+)
LOC110507041 LOC106612348 coding downstream 45595 1602116 ~ 1608092 (+)
atg16l1 atg16l1 coding downstream 68682 1625203 ~ 1677253 (+)
LOC118944795 NA coding downstream 97199 1653720 ~ 1653989 (+)
LOC118944796 NA coding downstream 98478 1654999 ~ 1655266 (+)
G2040158 NA non-coding upstream 15433 1537973 ~ 1539172 (+)
G2040075 NA non-coding upstream 115853 1435224 ~ 1438752 (+)
G2040054 NA non-coding upstream 144994 1408153 ~ 1409611 (+)
G2039948 NA non-coding upstream 218990 1335188 ~ 1335615 (+)
G2039942 NA non-coding upstream 221617 1332732 ~ 1332988 (+)
G2040166 NA non-coding downstream 5478 1561999 ~ 1562295 (+)
G2040167 NA non-coding downstream 5992 1562513 ~ 1562805 (+)
G2040168 NA non-coding downstream 6670 1563191 ~ 1563573 (+)
G2040169 NA non-coding downstream 7840 1564361 ~ 1564772 (+)
G2040172 NA non-coding downstream 13554 1570075 ~ 1587985 (+)
G2040080 NA other upstream 56040 1442677 ~ 1498565 (+)
LOC110507300 NA other upstream 736137 817321 ~ 831714 (+)
G2040180 atg16l1 other downstream 96319 1652840 ~ 1655336 (+)
G2040773 LOC106580643 other downstream 977373 2533894 ~ 2542349 (+)
rpl35a LOC106612432 other downstream 1113868 2670319 ~ 2685738 (+)
G2040863 NA other downstream 1243260 2799781 ~ 2802001 (+)
LOC110507334 LOC106612406 other downstream 1257755 2813649 ~ 2815411 (+)

Expression


Co-expression Network