G2040180 (atg16l1)


Basic Information

Item Value
gene id G2040180
gene name atg16l1
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 1652840 ~ 1655336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2333993
AAAAAAAGGTACTTTTAATATGGGTTGTTAGATGTGAAATTACCATGGTATTAGACTTCATGTCTTTCTCTTGAGGCAGCATTACGTTTGTTGGCTTACTGTAAATAAGTCAATTGTTTTGCTCCATGTTGGTTAGCTTCCCAGCTAAAGTGGTTTACAATTGGCAACCGCTCCTACACTATTTAGCTACTGTGACACTTGGCTATAGCGTATTGGATATAGTATGTATCCTTGTTTGTTTGAAGGATTTCCGGTGTGGATTTACTCAATCTACCCTGCGAGTGTTGCATTTTCCTTTCCGTTAGCATAGAAACAGACTAAAATGAAGTGTGAGGCAGTTGTGAGTTGCTTCTGCATGTCTCGTTGGTTACCGTTTCAGCTATGCTACGCTTGTGGTCTAGTTTGGCCGTTAGCGGCAACTGATTTGGGATCCTAGAAATCCCTGGCTTCCATTTGCTTCCTGACAAGAGTTCCCTGACTACTTCCCACTTCCATCGCTCTGCTTTCTGACCATGCACTGGCTTCCCTGGGACCATTGCATGTTGTGCTATGAGTTCTGTGAACATATGGTTGTATTTCGACTTCCCTAAATGCATTTTGTTTTTGATTGTCTGCGTGTTTGAGGTGATTAGTAGTTTTACGGCTCTCTACTCTGTTGACAGGCGTCGTCCTGGGAACTCGTACGGAACATCACCTGAAAACACGGAGACGACCTCCGGAGTGTGTGCCGATGTCCGCGTTCCCTCCACTGCCCTCCATGTGTTTGAAGCCCATGATGGGGAAGTGAATGCGGTGCGGTTCAGCCCAGGCTCCCGACTCCTGGCCACCGGAGGGATGGACCGCAGGGTCAAACTGTGGGAAGTGGTCTCAGGTATGTGACGTCTTTGTATGAGGAAAGTGTGTGACTTGTTGATCTGGAGGTCAGTGATGAAATGTAAAAGGTCTGATTGCCCAAGTCCCTTCCCATTGTCCCCTCTGCTCCCAGCAGCCCTTGCTGTACTCCCAGCATGCTCTAGTTGTGCATCGTTGGTCACAGGGGCTgctgacagagaggatgaccTCGCATCCTGTGTCTCTGAGACCAAGGCGTCACAGTGATGTTGGACATCCAACATGACCAATCACCAAGGAGTATCAGGGTGTGGGTTTGGGATAGGTAGATGATCTCAAGTTTTGCAGCTGAGACCTTCATGACAGGAGAATGATTAGTGCACCAAATGGTTGTGTCAATTAGGTATGTGACAATTTTGTCTTTCC

Function

symbol description
atg16l1 Predicted to be involved in autophagosome assembly and negative stranded viral RNA replication. Predicted to be active in autophagosome membrane. Is expressed in intestine. Human ortholog(s) of this gene implicated in inflammatory bowel disease 10. Orthologous to human ATG16L1 (autophagy related 16 like 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2333993 True 1257 TUCP 0.47 2 1652840 1655336

Neighbor

gene id symbol gene type direction distance location
LOC110507041 LOC106612348 coding upstream 44748 1602116 ~ 1608092 (+)
LOC110507313 LOC106579790 coding upstream 51410 1580680 ~ 1601430 (+)
gmnc gmnc coding upstream 350348 1290585 ~ 1302492 (+)
LOC110507306 LOC106579799 coding upstream 528686 1122000 ~ 1124154 (+)
LOC110507305 LOC106579784 coding upstream 561141 1075178 ~ 1091699 (+)
LOC118944798 NA coding downstream 12143 1667479 ~ 1667741 (+)
LOC110507315 LOC106579793 coding downstream 67262 1722598 ~ 1751727 (+)
LOC110507042 dgkd coding downstream 108369 1763705 ~ 1814445 (+)
LOC110507316 fa9 coding downstream 169845 1825181 ~ 1848777 (+)
LOC118944727 NA coding downstream 237118 1892454 ~ 1905690 (+)
G2040172 NA non-coding upstream 64855 1570075 ~ 1587985 (+)
G2040169 NA non-coding upstream 88068 1564361 ~ 1564772 (+)
G2040168 NA non-coding upstream 89267 1563191 ~ 1563573 (+)
G2040167 NA non-coding upstream 90035 1562513 ~ 1562805 (+)
G2040166 NA non-coding upstream 90545 1561999 ~ 1562295 (+)
G2040221 NA non-coding downstream 9605 1664941 ~ 1688621 (+)
G2040235 NA non-coding downstream 41313 1696649 ~ 1730268 (+)
G2040241 NA non-coding downstream 48182 1703518 ~ 1745620 (+)
G2040319 NA non-coding downstream 181087 1836423 ~ 1850761 (+)
LOC110507322 LOC106580637 non-coding downstream 310268 1965604 ~ 1972042 (+)
G2040080 NA other upstream 154275 1442677 ~ 1498565 (+)
LOC110507300 NA other upstream 834372 817321 ~ 831714 (+)
G2040773 LOC106580643 other downstream 878558 2533894 ~ 2542349 (+)
rpl35a LOC106612432 other downstream 1015053 2670319 ~ 2685738 (+)
G2040863 NA other downstream 1144445 2799781 ~ 2802001 (+)
LOC110507334 LOC106612406 other downstream 1158940 2813649 ~ 2815411 (+)
G2040882 NA other downstream 1178760 2834096 ~ 2838927 (+)

Expression


Co-expression Network