G2040235


Basic Information

Item Value
gene id G2040235
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 1696649 ~ 1730268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2334051
agtaaaacactggaatgttagatttgcagtggaagaatgtgcaaagtagaattTAAAAATAattgggtgcaaaggagctaaataaataaatacagtaggggaagaggtagttgtttgggctaaattatagatgggctatgtacaggtgcagtgatctgtgagctgctcaggcagctggtgcttaaagctagaggaaggtaagagtctccagcttcaggaaTTTTTGCAAATCATTCCAGACATTTGCAGCATAGAACTggaaggaattggctttgggggtggctagagagatatacctgctggagcgtgtgctatggtgaccagtgagctgagataaggcggggcctTACCTATCAGAGACTTGttgatgacctgaagccagtgggtttggcgacgagtatgaagcgagggccagccaacgagagcgtacaggtcgcaatggtggcttgaata

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2334051 True 453 lncRNA 0.46 2 1696649 1730268

Neighbor

gene id symbol gene type direction distance location
atg16l1 atg16l1 coding upstream 19396 1625203 ~ 1677253 (+)
LOC118944798 NA coding upstream 28908 1667479 ~ 1667741 (+)
LOC118944796 NA coding upstream 41383 1654999 ~ 1655266 (+)
LOC118944795 NA coding upstream 42660 1653720 ~ 1653989 (+)
LOC110507041 LOC106612348 coding upstream 88557 1602116 ~ 1608092 (+)
LOC110507042 dgkd coding downstream 33437 1763705 ~ 1814445 (+)
LOC110507316 fa9 coding downstream 94913 1825181 ~ 1848777 (+)
LOC118944727 NA coding downstream 162186 1892454 ~ 1905690 (+)
LOC110507322 LOC106580637 coding downstream 236261 1965604 ~ 1972042 (+)
LOC110507327 LOC106612439 coding downstream 765391 2495659 ~ 2498344 (+)
G2040221 NA non-coding upstream 8028 1664941 ~ 1688621 (+)
G2040172 NA non-coding upstream 108664 1570075 ~ 1587985 (+)
G2040169 NA non-coding upstream 131877 1564361 ~ 1564772 (+)
G2040168 NA non-coding upstream 133076 1563191 ~ 1563573 (+)
G2040167 NA non-coding upstream 133844 1562513 ~ 1562805 (+)
G2040319 NA non-coding downstream 106155 1836423 ~ 1850761 (+)
G2040560 NA non-coding downstream 477349 2207617 ~ 2212183 (+)
G2040605 NA non-coding downstream 552589 2282857 ~ 2286192 (+)
G2040607 NA non-coding downstream 556121 2286389 ~ 2294787 (+)
G2040180 atg16l1 other upstream 41313 1652840 ~ 1655336 (+)
G2040080 NA other upstream 198084 1442677 ~ 1498565 (+)
LOC110507300 NA other upstream 878181 817321 ~ 831714 (+)
G2040773 LOC106580643 other downstream 803626 2533894 ~ 2542349 (+)
rpl35a LOC106612432 other downstream 940121 2670319 ~ 2685738 (+)
G2040863 NA other downstream 1069513 2799781 ~ 2802001 (+)
LOC110507334 LOC106612406 other downstream 1084008 2813649 ~ 2815411 (+)
G2040882 NA other downstream 1103828 2834096 ~ 2838927 (+)

Expression


Co-expression Network