G2040319


Basic Information

Item Value
gene id G2040319
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 1836423 ~ 1850761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2334145
aaaaagtaaaaaaaaaaaagaaaaaagagaagaaaaaaagggAACATTTAAATCAGAGGGGCATCCGGTTGCCCTGGACGCTGATCTTCACCGCGTGGCCCGTCTTCGTCATACGCTTTATGTCAGCGAAGCGACGCAACTGTTTGTCCACCCGTGACATGCCCTTCTTAACCGGGGcctgggagacagagggaggagaggattacAAAAGGAGAGACAGGAAAGTGGAACTACTCTGTCGCAAACATTCACCAAAACACAGTGCGTCTTTGCCACAATATTGGAGAGTGGTAATACGGTAGTACCACTACAAGCCTAGCGAGCAAGGTtattgacacacaaacacactcgcaTCAAATTTGGAATGGTCTGTCGATCTGATATTTCTCATTAAGTTTCGTAACCATATTATTTAAAACTTTGAACACTAAGTTGATTAGGAACACATTCCCACCATGCTGGGCACAAACTCAAGCAACAATGGTATAGCCAAATGTCTTAAAACCAGGGAAGTTCAAATGTTACAGCTCAAACAgtgtagtactgtgtgttatGTTTTAAACAGGGGACTCATTCATTCATTAGGCGGCTGGGCAACAGTGTGCAGAACCGTTTGACTTGGTAAGTGGTGGGATGGTTGCTCTCCAGTCCACACTGCACACAATGGCCCTGGGTAGAAGCTTACCCTCTCTCATTCTCAACCTTCACCATTAGTGGGGGTAACaattaactgacctaagatcagtTTCTATGGGCAACTTTGTCCAACCAAGGACCAGCAAAAGACATGCAGGTGGCACTTACTGCCCCGTGTGGTGACAGTAGGAATTACAGGGGCATGCCATTGCCATCCACATTGATCTTCACCGCTGTGATGCGCCGCTGTGACCTCTGCTGGGCGATGCGACGCTTGTGCTTTTCCAATCGGCTTATCCCTTTCTTAATGCTTGTCTACAGTCGGGAACCAATCACATTCAGCTCCTTACCGATGCCCACGTCATGTATTGACAAAACATCTAACAGACCCAGTTCAGTCACAACTAAGGTAACTTAGCTAAAAATGACCTAGAAACGGTTATGTCCGGAATCAAGGATTTCAGGTTGGAGAAGAAAATTGGTCTGATTTATACAGTTAAAAGAAATGGGAAAACTAtcctttctcctcccttctcccaggCAGACAGCTGGACGGACAAACACTCACTGCTCTGGACTCGCTCTCCACGTTCCATTTGGGCCGCACAACGTAGTCCTTGTTGGATGGCATGGGCACCCTGGCCCGGGCACAGAACCCAGGGTCGCCTGGGCGCAGAGCTCTGTCGGGCAACAAACACAAGAGGGGTGTCAGCAAAGAGCAACACAGACAACAGactaagacacacacaccacatgtgaACACCCAGGTCACTACTCACTTCTCTTCTCCCGTC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2334145 True 1430 lncRNA 0.47 2 1836423 1850761

Neighbor

gene id symbol gene type direction distance location
LOC110507042 dgkd coding upstream 21978 1763705 ~ 1814445 (+)
LOC110507315 LOC106579793 coding upstream 84696 1722598 ~ 1751727 (+)
atg16l1 atg16l1 coding upstream 159170 1625203 ~ 1677253 (+)
LOC118944798 NA coding upstream 168682 1667479 ~ 1667741 (+)
LOC118944796 NA coding upstream 181157 1654999 ~ 1655266 (+)
LOC118944727 NA coding downstream 41693 1892454 ~ 1905690 (+)
LOC110507322 LOC106580637 coding downstream 115768 1965604 ~ 1972042 (+)
LOC110507327 LOC106612439 coding downstream 644898 2495659 ~ 2498344 (+)
LOC110507330 LOC106580646 coding downstream 717005 2567766 ~ 2650546 (+)
LOC110507331 NA coding downstream 734250 2585011 ~ 2595625 (+)
G2040241 NA non-coding upstream 90803 1703518 ~ 1745620 (+)
G2040235 NA non-coding upstream 106155 1696649 ~ 1730268 (+)
G2040221 NA non-coding upstream 147802 1664941 ~ 1688621 (+)
G2040172 NA non-coding upstream 248438 1570075 ~ 1587985 (+)
G2040169 NA non-coding upstream 271651 1564361 ~ 1564772 (+)
G2040560 NA non-coding downstream 356856 2207617 ~ 2212183 (+)
G2040605 NA non-coding downstream 432096 2282857 ~ 2286192 (+)
G2040607 NA non-coding downstream 435628 2286389 ~ 2294787 (+)
G2040608 NA non-coding downstream 437294 2288055 ~ 2293431 (+)
G2040180 atg16l1 other upstream 181087 1652840 ~ 1655336 (+)
G2040080 NA other upstream 337858 1442677 ~ 1498565 (+)
LOC110507300 NA other upstream 1017955 817321 ~ 831714 (+)
G2040773 LOC106580643 other downstream 683133 2533894 ~ 2542349 (+)
rpl35a LOC106612432 other downstream 819628 2670319 ~ 2685738 (+)
G2040863 NA other downstream 949020 2799781 ~ 2802001 (+)
LOC110507334 LOC106612406 other downstream 963515 2813649 ~ 2815411 (+)
G2040882 NA other downstream 983335 2834096 ~ 2838927 (+)

Expression


Co-expression Network