G2040768


Basic Information

Item Value
gene id G2040768
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2518728 ~ 2520306 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2334645
GTTTTATTAGTATGGAGTTATGATTGAATAGCTCTTAAAACACCTATTTATAAGTTAGCAATGTAACAGgaggatttaaaaatatatatattctgaaTTTCTTAGATAAAtcaactgggtggtttgagccctgaatagCTGACAGTCGTGTTATTTCAGACCGTGTagcatgggtatgacaaaacatttatttttactcctctaattatgttggtaaccagtttataacagcaataaggcaccaagggtgtgtgatatTTGGTTGGAGATTGTTGGGAAGACGCAGCAGAGAGACCTGGAGCCAGCTGCTGCTGTTGTAGAAATAATTGTTTTTGTGCTGGTGGTTTCCCATGCTGACACAGATATGGATGTTTCCAGGATTGTCTTCATTCGGGCACGCAACAGAAAATGAGCATTTCTTATAGGACAAGTCCACGtaatccctccctgtttcagactgttttatttagtttggtgcctaatgaacaagaCCAGGGGTGTCTGAAATGACACCATTTTGGCTAGTTGCCAAAATACTACACTATGTTGGGAACAGGGAGTCATTTCAGCTTCACCCCGGGTTCCACTGACAAAAGAGATGCTCCCTCTCCTTCCAAGAACACACATGTTCAGGAGAAAAATCAATCCATATGCACTTGAAATGtatcctcgctctctctctgtcccactcaaTCACAtaaaacacatgcacacatattCGACACGGATTAAGAAATCAAGAATTTTGTTAATTTTCTGATGTACATATTTGGCCCTAAACTGATATTACTAAGAGCTAAAAAGATGTAGCATTATTCCAAGATGGCTGCCCACATGGGGTTAACAGTTAAAGGGTACAGCACCCACACCTTCACAAGATGGACTATCCTCCTTGATGTTAAGTGAACCAAACCAGCTCCAACTATTATGATCAGGAAGGATGGGAGTGGGGAGGCCAGTTGAGTATACAGAGTGCACGCACAATTGACATTCCATTTGGACACAGTTTGCACTCCATGTAGCCTAAAACCTGCCTGCTTCAGGACAATAGACAAGAGTATGTCACTTTGAACTGCCGGGCCGAGCTAAATGGCAAACAAAACACAAACGGTGGTGTGGGGGAGCAGAGAGGATGATGGGAAAGCAGCCAGTAAAACTCAGTTCTCACTCGGAGGATGATGATTGGCAGTCGGGGAATAGAGAGTGGGGGGGCTTTAGGTTATTGGGGTTGAAGTCAATTGGTAACTTGGCATGTCTGTCATAGATGGCGTAATGGGCAAGTTGCCTGGGGTGGTAGGTTTTGGAAAGTCCTTCCTGTCCCTCACAGGTAGCCCTCCTTGCGGAACTGTTCCTGCAAGATATCCCGGTACTCGTCAAAGCCCCCCTCCACTCGCCGCACGTTCCCGTGCTCACagacccacagctctctgcacaCCATCCGGATCAGACGCTCGTCGTGAGAGACAAGGA
>TU2334646
GTTTTATTAGTATGGAGTTATGATTGAATAGCTCTTAAAACACCTATTTATAAGTTAGCAATGTAACAGgaggatttaaaaatatatatattctgaaTTTCTTAGATAAAtcaactgggtggtttgagccctgaatagCTGACAGTCGTGTTATTTCAGACCGTGTagcatgggtatgacaaaacatttatttttactcctctaattatgttggtaaccagtttataacagcaataaggcaccaagggtgtgtgataTATGCTTAAATACTTTACTTGGTTGGAGATTGTTGGGAAGACGCAGCAGAGAGACCTGGAGCCAGCTGCTGCTGTTGTAGAAATAATTGTTTTTGTGCTGGTGGTTTCCCATGCTGACACAGATATGGATGTTTCCAGGATTGTCTTCATTCGGGCACGCAACAGAAAATGAGCATTTCTTATAGGACAAGTCCACGtaatccctccctgtttcagactgttttatttagtttggtgcctaatgaacaagaCCAGGGGTGTCTGAAATGACACCATTTTGGCTAGTTGCCAAAATACTACACTATGTTGGGAACAGGGAGTCATTTCAGCTTCACCCCGGGTTCCACTGACAAAAGAGATGCTCCCTCTCCTTCCAAGAACACACATGTTCAGGAGAAAAATCAATCCATATGCACTTGAAATGtatcctcgctctctctctgtcccactcaaTCACAtaaaacacatgcacacatattCGACACGGATTAAGAAATCAAGAATTTTGTTAATTTTCTGATGTACATATTTGGCCCTAAACTGATATTACTAAGAGCTAAAAAGATGTAGCATTATTCCAAGATGGCTGCCCACATGGGGTTAACAGTTAAAGGGTACAGCACCCACACCTTCACAAGATGGACTATCCTCCTTGATGTTAAGTGAACCAAACCAGCTCCAACTATTATGATCAGGAAGGATGGGAGTGGGGAGGCCAGTTGAGTATACAGAGTGCACGCACAATTGACATTCCATTTGGACACAGTTTGCACTCCATGTAGCCTAAAACCTGCCTGCTTCAGGACAATAGACAAGAGTATGTCACTTTGAACTGCCGGGCCGAGCTAAATGGCAAACAAAACACAAACGGTGGTGTGGGGGAGCAGAGAGGATGATGGGAAAGCAGCCAGTAAAACTCAGTTCTCACTCGGAGGATGATGATTGGCAGTCGGGGAATAGAGAGTGGGGGGGCTTTAGGTTATTGGGGTTGAAGTCAATTGGTAACTTGGCATGTCTGTCATAGATGGCGTAATGGGCAAGTTGCCTGGGGTGGTAGGTTTTGGAAAGTCCTTCCTGTCCCTCACAGGTAGCCCTCCTTGCGGAACTGTTCCTGCAAGATATCCCGGTACTCGTCAAAGCCCCCCTCCACTCGCCGCACGTTCCCGTGCTCACagacccacagctctctgcacaCCATCCGGATCAGACGCTCGTCGTGAGAGACAAGGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2334645 False 1470 lncRNA 0.45 2 2518728 2520306
TU2334646 True 1487 lncRNA 0.44 2 2518728 2520306

Neighbor

gene id symbol gene type direction distance location
LOC110507327 LOC106612439 coding upstream 20384 2495659 ~ 2498344 (+)
LOC110507322 LOC106580637 coding upstream 546686 1965604 ~ 1972042 (+)
LOC118944727 NA coding upstream 613038 1892454 ~ 1905690 (+)
LOC110507316 fa9 coding upstream 669951 1825181 ~ 1848777 (+)
LOC110507042 dgkd coding upstream 704283 1763705 ~ 1814445 (+)
LOC110507330 LOC106580646 coding downstream 47460 2567766 ~ 2650546 (+)
LOC110507331 NA coding downstream 64705 2585011 ~ 2595625 (+)
rpl35a LOC106612432 coding downstream 150013 2670319 ~ 2685738 (+)
abcc5 LOC106580650 coding downstream 167698 2688004 ~ 2752049 (+)
rnpepl1 rnpepl1 coding downstream 244097 2764403 ~ 2799047 (+)
G2040610 NA non-coding upstream 217349 2289651 ~ 2301379 (+)
G2040607 NA non-coding upstream 223941 2286389 ~ 2294787 (+)
G2040608 NA non-coding upstream 225297 2288055 ~ 2293431 (+)
G2040605 NA non-coding upstream 232536 2282857 ~ 2286192 (+)
G2040560 NA non-coding upstream 306545 2207617 ~ 2212183 (+)
G2040774 LOC106580643 non-coding downstream 7705 2528011 ~ 2528970 (+)
G2040790 NA non-coding downstream 32813 2553119 ~ 2643392 (+)
G2040842 NA non-coding downstream 201981 2722287 ~ 2740038 (+)
G2040761 NA non-coding downstream 222636 2742942 ~ 2743297 (+)
G2040865 NA non-coding downstream 282096 2802402 ~ 2802622 (+)
G2040180 atg16l1 other upstream 863392 1652840 ~ 1655336 (+)
G2040080 NA other upstream 1020163 1442677 ~ 1498565 (+)
LOC110507300 NA other upstream 1700260 817321 ~ 831714 (+)
G2040773 LOC106580643 other downstream 13588 2533894 ~ 2542349 (+)
G2040863 NA other downstream 279475 2799781 ~ 2802001 (+)
LOC110507334 LOC106612406 other downstream 293970 2813649 ~ 2815411 (+)
G2040882 NA other downstream 313790 2834096 ~ 2838927 (+)

Expression


Co-expression Network