G2040774 (LOC106580643)


Basic Information

Item Value
gene id G2040774
gene name LOC106580643
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2528011 ~ 2528970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2334653
TGGCTATGCGCGCATTGAGCAGGCGTTCCTCTGTCAGGAGACCCTCCCGGACCGTGTCGCTCTCCAGCACGCTCTGAAGTGCCCCTGTGTCGTCTCCAGCGACCTCCTGCTCCACGTGCAGGATTGTGATGTGGGCAGGGACACGCAGGCTGCGGCTCGCCAGCATCTTTAGCAGCGTGGTCTTCCCCAGGCCGTTGCGGCCAATCAGGCCGTAGCGGCGACCTGTTGACAGAGACAGCTCCGCCCCCTGCAGCAAAGACCTCTCGCCAAACGACACGTCAAAGTTCTCGATGCGGATATCGTAGCTGCGATTCTTCCCGGACAAGTCGACACGACTGTCTTTCTTGCTACTGGCCTGGCTGGCTGATGCCTCCTCCAGTACcctgagacaaacagagagaggggataaggacagtgagagacacagagggacacaAAGAGATAGAAGTACAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2334653 True 453 lncRNA 0.59 2 2528011 2528970

Neighbor

gene id symbol gene type direction distance location
LOC110507327 LOC106612439 coding upstream 29667 2495659 ~ 2498344 (+)
LOC110507322 LOC106580637 coding upstream 555969 1965604 ~ 1972042 (+)
LOC118944727 NA coding upstream 622321 1892454 ~ 1905690 (+)
LOC110507316 fa9 coding upstream 679234 1825181 ~ 1848777 (+)
LOC110507042 dgkd coding upstream 713566 1763705 ~ 1814445 (+)
LOC110507330 LOC106580646 coding downstream 38796 2567766 ~ 2650546 (+)
LOC110507331 NA coding downstream 56041 2585011 ~ 2595625 (+)
rpl35a LOC106612432 coding downstream 141349 2670319 ~ 2685738 (+)
abcc5 LOC106580650 coding downstream 159034 2688004 ~ 2752049 (+)
rnpepl1 rnpepl1 coding downstream 235433 2764403 ~ 2799047 (+)
G2040768 NA non-coding upstream 7705 2518728 ~ 2520306 (+)
G2040610 NA non-coding upstream 226632 2289651 ~ 2301379 (+)
G2040607 NA non-coding upstream 233224 2286389 ~ 2294787 (+)
G2040608 NA non-coding upstream 234580 2288055 ~ 2293431 (+)
G2040605 NA non-coding upstream 241819 2282857 ~ 2286192 (+)
G2040790 NA non-coding downstream 24149 2553119 ~ 2643392 (+)
G2040842 NA non-coding downstream 193317 2722287 ~ 2740038 (+)
G2040761 NA non-coding downstream 213972 2742942 ~ 2743297 (+)
G2040865 NA non-coding downstream 273432 2802402 ~ 2802622 (+)
G2040874 NA non-coding downstream 282541 2811511 ~ 2812731 (+)
G2040180 atg16l1 other upstream 872675 1652840 ~ 1655336 (+)
G2040080 NA other upstream 1029446 1442677 ~ 1498565 (+)
LOC110507300 NA other upstream 1709543 817321 ~ 831714 (+)
G2040773 LOC106580643 other downstream 4924 2533894 ~ 2542349 (+)
G2040863 NA other downstream 270811 2799781 ~ 2802001 (+)
LOC110507334 LOC106612406 other downstream 285306 2813649 ~ 2815411 (+)
G2040882 NA other downstream 305126 2834096 ~ 2838927 (+)

Expression


Co-expression Network