G2040842


Basic Information

Item Value
gene id G2040842
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2722287 ~ 2740038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2334728
gttactgatggtaggctttgttactttggtcccagctctctgcaggtcattcactaggtccccccgtgtggttatgggatttttgctcaccgttcttgtgatcattttgaccccacggagtgagatcttgcgtggagccccagatcgagggagattatcagtggtcttgtatgtcttccatttcctaataattgctcccacagttgatttcttcaaaccaagctgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgtttcgggtgtcctttgacagctctttggtcttggccatagtggagtttggagtgtgactgtttgaggttgtgtcttttatactgataacaagttcaaacaggtgccattaatacaggtaacgagtggaggacagaggagcctcttcaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgcaggtgaccaaatacttattttccaccataatttgcaaataaattcattaaaaatcctaaatcctccttttctcattttgtctgtcatagttgaagtgtacctatgatgaaaattacaggcctctcatctttttaggtgggagaacttgcacaattggtggctgactaaatacttttttgccccac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2334728 True 655 lncRNA 0.43 2 2722287 2740038

Neighbor

gene id symbol gene type direction distance location
rpl35a LOC106612432 coding upstream 36549 2670319 ~ 2685738 (+)
LOC110507330 LOC106580646 coding upstream 71741 2567766 ~ 2650546 (+)
LOC110507331 NA coding upstream 126662 2585011 ~ 2595625 (+)
LOC110507327 LOC106612439 coding upstream 223943 2495659 ~ 2498344 (+)
LOC110507322 LOC106580637 coding upstream 750245 1965604 ~ 1972042 (+)
rnpepl1 rnpepl1 coding downstream 24365 2764403 ~ 2799047 (+)
LOC110507256 LOC106612406 coding downstream 68245 2808283 ~ 2810261 (+)
LOC110507334 LOC106612406 coding downstream 73611 2813649 ~ 2815411 (+)
LOC118944765 NA coding downstream 110915 2850953 ~ 2854454 (+)
LOC110507335 NA coding downstream 141590 2881628 ~ 2889241 (+)
G2040790 NA non-coding upstream 78895 2553119 ~ 2643392 (+)
G2040774 LOC106580643 non-coding upstream 193317 2528011 ~ 2528970 (+)
G2040768 NA non-coding upstream 201981 2518728 ~ 2520306 (+)
G2040610 NA non-coding upstream 420908 2289651 ~ 2301379 (+)
G2040607 NA non-coding upstream 427500 2286389 ~ 2294787 (+)
G2040761 NA non-coding downstream 2904 2742942 ~ 2743297 (+)
G2040865 NA non-coding downstream 62364 2802402 ~ 2802622 (+)
G2040874 NA non-coding downstream 71473 2811511 ~ 2812731 (+)
G2040877 NA non-coding downstream 75804 2815842 ~ 2890204 (+)
G2040899 NA non-coding downstream 108375 2848413 ~ 2848934 (+)
G2040773 LOC106580643 other upstream 179938 2533894 ~ 2542349 (+)
G2040180 atg16l1 other upstream 1066951 1652840 ~ 1655336 (+)
G2040080 NA other upstream 1223722 1442677 ~ 1498565 (+)
LOC110507300 NA other upstream 1903819 817321 ~ 831714 (+)
G2040863 NA other downstream 59743 2799781 ~ 2802001 (+)
G2040882 NA other downstream 94058 2834096 ~ 2838927 (+)
G2043193 NA other downstream 1665420 4405458 ~ 4406126 (+)
LOC110507374 spa17 other downstream 1945847 4685868 ~ 4692872 (+)

Expression


Co-expression Network