G2040877


Basic Information

Item Value
gene id G2040877
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2815842 ~ 2890204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2334769
GCTTTATACTTAAAAAACACGTCAACCAATAAAATGCTCTGGCTTTAACATCAGACTGACAATGAGTTCACCAAGCTACTCTCCTCCTGCTGAAGAACAGGAgatctgctggacggagaaagaaggtATTtggctgaacattgtcgtgaaagaggagAATGAAggggaggatgttacagtaaacgaagaagtagagggtgaggctgttacagAGAGACAAAAGAAGAAGactcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaggaagagagggaggaggatgctGTTTTTGGAGTGAAGGAGATAACTGTCACAttgaaggaggagaaggaagaacaAGAATAGGAGGAGGAGACATGCGATCTGATTAAGACcagagagagaccagactctgACAGCGGGAAGAGTTCCTCAGAGGAAACAGACCCGGAGACGCCTAACCAACACCACTGgtcccactgtggaaagagttttaGTGtttgaggtgttctgatctggagagactcttctctgcctcttcaGCATCATgtggttgttgaggctccccagaggatccacaatAGTCCCgtatctctcctgtgtgaacaacaaagtcagacagatgacTAAAGGCCCACATCCATTGTAAAAGCGTGCCAGACGACTTTGGTCTCCAAGGCCCCCTTCTGTGTTTGCTAAAATTGCGGCACGAGGGCAATTTGATTACAGAAACTCCTACCTGCTAATGAGGAAGCCGATAGTTATGGATGTACTATATCTGCCTGGAGCAAAAATGGTGAGCAAAgattttagtttttcacaatgtattctgaatgtgaatgggggaaaactcaggggagtaacctccatttccaggttgcttatgagtgcatttcacactactttggattataattgtaaggcTCATTTGAATGTCCTGTTTAATATAATGTTTGCTACAGTATGAATTAtgtgtaattattgaagaaccgcgTTAATGACAGTATCCATTTAGGTGTTATC
>TU2334770
CTGTCAGCATCACCTTTTACGGTGGATTCCGCTGTTGTGGGCCTTTtaccatctgtctgactttgttgttcacacaggagagagacaggactacCGTGggtcctctggggagcctcaacaacctcatgatgtTGACAAGGCAGAGAAGactctctccagatcagaacacgtCAAGAAACCCCAGCAGAGATCCACAGGGAAGAgaactcactgctgctctgactgtgggaagagattcaccacctcatcaggcattaaaattcatcagagaatccacacaggagagaaaccacaggagagaaatatcttagctgtaatcaatgtgggaagagatactctgataaaTGTTAtctgatcaaacatcagaaaatacatggagttgtttcatgatatcaatgaaatcatgtcacaatgtagaatgttttaacattgtagtaggagtattttaatgatgtcacaatgtagaagccTAAATGTTTGCCCCTTTATcaattgatttcaacatgatataGATATTAGCCTCAGGGGAAAAATCCAGGCTCAGAATTGAAAGTTGAGTTGTGTTACACTTACCACGTTGATGACCgacttgaatcaaaatgcaacactccaaaatgtagctagctgttttCTTCAAATTGTCCTCTATCCAGTGATGTACACATTTCTCCCAGATTCcgtgtggtttttgagctgttagttttaacaggactTGCAACCTAATCTCCCTCCTTTCGCAGTTGATTTCAACAGATGAGTTATGACACATAAGTGTTGCATTCCTTTGTTTAGCGACCCCTAAATTTAAATGCATCactccaaaatgtagctgactgtcttctgcaggttgtcctctaaccagcgAGGTAAAAGATATCTCaaatttccatgtgttttttagttgtgttagtttctAATAACTAATAACCTAGTCGATATTAGTGATGTATTGCtacttgtcaaaacaacaacGTTTCTGGTGTTTGTGAAGTTTATAAGGAGCTTGTTTAAACAAATACAAGTAATATGATTATTGTGGCAGATGTTTGTGGATATTGCACATTTTATGTTTAGGTTTTCAATTTATCCcaaactgtttctgcatattAGTTATTGATTTGGACAGGTTAAAACTGTGGTTTGACATCGGGATATCCCACCTagcaaaatgtaattgaaaagatGTTGAAAAGAAGACTATGCCCGAAATATGTATTTTCGGGTAGTTTTTTCAGTGACTTGAAAATAACTTAATTTCAACTTacttgcaggtagcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2334769 False 1017 lncRNA 0.44 5 2815842 2854431
TU2334770 True 1277 lncRNA 0.38 2 2888020 2890204

Neighbor

gene id symbol gene type direction distance location
LOC110507334 LOC106612406 coding upstream 431 2813649 ~ 2815411 (+)
LOC110507256 LOC106612406 coding upstream 5581 2808283 ~ 2810261 (+)
rnpepl1 rnpepl1 coding upstream 16795 2764403 ~ 2799047 (+)
abcc5 LOC106580650 coding upstream 63793 2688004 ~ 2752049 (+)
rpl35a LOC106612432 coding upstream 130104 2670319 ~ 2685738 (+)
LOC110507336 LOC106566134 coding downstream 12601 2902805 ~ 2916027 (+)
ano7 LOC106580699 coding downstream 90809 2981013 ~ 3029319 (+)
LOC118944768 NA coding downstream 154341 3044545 ~ 3046330 (+)
rnf168 LOC106580664 coding downstream 174698 3064902 ~ 3073180 (+)
LOC110507257 LOC106580698 coding downstream 193501 3083705 ~ 3085115 (+)
G2040874 NA non-coding upstream 3111 2811511 ~ 2812731 (+)
G2040865 NA non-coding upstream 13220 2802402 ~ 2802622 (+)
G2040761 NA non-coding upstream 72545 2742942 ~ 2743297 (+)
G2040842 NA non-coding upstream 75804 2722287 ~ 2740038 (+)
G2040790 NA non-coding upstream 172450 2553119 ~ 2643392 (+)
G2040923 NA non-coding downstream 8498 2898702 ~ 2898924 (+)
G2040927 NA non-coding downstream 16613 2906817 ~ 2907037 (+)
G2040928 NA non-coding downstream 17191 2907395 ~ 2908036 (+)
G2040929 LOC100136012 non-coding downstream 17936 2908140 ~ 2908375 (+)
G2040863 NA other upstream 13841 2799781 ~ 2802001 (+)
G2040773 LOC106580643 other upstream 273493 2533894 ~ 2542349 (+)
G2040180 atg16l1 other upstream 1160506 1652840 ~ 1655336 (+)
G2043193 NA other downstream 1515254 4405458 ~ 4406126 (+)
LOC110507374 spa17 other downstream 1795681 4685868 ~ 4692872 (+)
LOC110507397 sfr16 other downstream 3001643 5874691 ~ 5896127 (+)
LOC110507398 znf296 other downstream 3007313 5897208 ~ 5910058 (+)
G2045522 NA other downstream 3604629 6494833 ~ 6495134 (+)

Expression


Co-expression Network