G2040933


Basic Information

Item Value
gene id G2040933
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2911237 ~ 2913371 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2334831
TATATCAGACCACACCAGCGTTCCTATATCAGAACACACCAGCGTTCCTatgatggtctccacaccttgttattgtactagctccactactatactatgatggtctccacaccttgttattgTACTAGCTCCACTACTATACTCtgatggtctccacaccttgttattgtactagctccactactatactttgatggtctccacaccttgttattgtactagctccactactagtaccactactatactatgatggtctccacaccttgttattgtactagctccactactatacaatgatggtctccacaccttgttattgtactagctccactactatactatgatggtctccacaccttattgtactagctccactactatactatgatggtctccacaccttgttattgtactagctccactactatactatgatggtctccacaccttgttTTTGTACTCGCTCCACTActagtaccactactatactatgatggtctccacaccttATTATTGTACTAGCTCCACTActagtaccactactatactatgatgTTATTCACACCTTgttatcaaatatatttttataaagccctttttacatcagccgatgtcacaaagtgataTACAggaactcagcctaaaaccccaaacagcaatgcagatgtagaagcaccgtGGCTCCCCAATTAAGGTTCAACCAGCTGCCTGTAGTTGGGAGgtagttctgtagttgtataCAGCCAGACTGGAAGGGTTCATGCAAAGTGTTGGTAGAGAGGTAGTTCTGTAGTATCTAGTCAGACTGGAAGGGTTCATGCAGAtttctagctccaacggtGCAGTAATACCTACCAATACaaatcaatacacacacaaatccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2334831 True 887 lncRNA 0.42 5 2911237 2913371

Neighbor

gene id symbol gene type direction distance location
LOC110507335 NA coding upstream 21996 2881628 ~ 2889241 (+)
LOC118944765 NA coding upstream 56783 2850953 ~ 2854454 (+)
LOC110507334 LOC106612406 coding upstream 95826 2813649 ~ 2815411 (+)
LOC110507256 LOC106612406 coding upstream 100976 2808283 ~ 2810261 (+)
rnpepl1 rnpepl1 coding upstream 112190 2764403 ~ 2799047 (+)
ano7 LOC106580699 coding downstream 67642 2981013 ~ 3029319 (+)
LOC118944768 NA coding downstream 131174 3044545 ~ 3046330 (+)
rnf168 LOC106580664 coding downstream 151531 3064902 ~ 3073180 (+)
LOC110507257 LOC106580698 coding downstream 170334 3083705 ~ 3085115 (+)
LOC110507341 LOC106580714 coding downstream 194080 3107451 ~ 3113758 (+)
G2040930 NA non-coding upstream 2519 2908493 ~ 2908718 (+)
G2040929 LOC100136012 non-coding upstream 2862 2908140 ~ 2908375 (+)
G2040928 NA non-coding upstream 3201 2907395 ~ 2908036 (+)
G2040927 NA non-coding upstream 4200 2906817 ~ 2907037 (+)
LOC110507336 LOC106566134 non-coding upstream 7866 2902805 ~ 2916027 (+)
G2040935 NA non-coding downstream 3055 2916426 ~ 2916722 (+)
G2040934 NA non-coding downstream 3870 2917241 ~ 2917459 (+)
G2040936 NA non-coding downstream 4930 2918301 ~ 2918593 (+)
G2040938 NA non-coding downstream 6509 2919880 ~ 2920111 (+)
G2040939 NA non-coding downstream 7563 2920934 ~ 2921784 (+)
G2040882 NA other upstream 72310 2834096 ~ 2838927 (+)
G2040863 NA other upstream 109236 2799781 ~ 2802001 (+)
rpl35a LOC106612432 other upstream 225499 2670319 ~ 2685738 (+)
G2040773 LOC106580643 other upstream 368888 2533894 ~ 2542349 (+)
G2043193 NA other downstream 1492087 4405458 ~ 4406126 (+)
LOC110507374 spa17 other downstream 1772514 4685868 ~ 4692872 (+)
LOC110507397 sfr16 other downstream 2978476 5874691 ~ 5896127 (+)
LOC110507398 znf296 other downstream 2984146 5897208 ~ 5910058 (+)
G2045522 NA other downstream 3581462 6494833 ~ 6495134 (+)

Expression


Co-expression Network