G2042542


Basic Information

Item Value
gene id G2042542
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 3278882 ~ 3281824 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2336629
gctaattgacataatttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaatcagccaagacctcagaaaaaaaattgtagacctccacaagtctggttcatccttgggagcaatttccgaatgcctgaaggtaccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggaccacgaagcCGTCATACCGGTCAGGAAGgcgacacgttctgtctcctagagatgaacgtactttggtgtgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacaggtacaaaagtatctatatccacagtaaaacgagtcctacagtatatcgacataacctgaatggccgctcagcaaggaagaagccactgctccaaaaaccaccataaaaaagccagactacagtttgcaactgcacatggggacaaagattgtactttttggagaaatgtcctttggtctgatgaaacaaaaatagaactgtttggacataatgaccatcgttatgtttggaggagaaagggggaggcttgcaagccgaagaacaccatcccaaccatgaagcatggcggtggcagcatcatgttgtggggatgatttgctgcaggagggactggtgcacttcacaaaatagatggcatcatgagatacattgaagcaacatctcaagacatcagtcaggaagttaaagcttggttgcaaatgggtcttccaaatggacaatgaccccaagcatacttccaacattgtggcaaaatggcttaaggacaacaaagacaaggtattggagttgccatcacaaagccctgacctcaatcctatagaaaatgtgtaggcagaactgaaaaagtgtgtgcgagcaaggaggcctacaaacctgactcagttacaccagctctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagcttgtggaaggctacccaaaatgtttgacccaagttaaataatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaataacagctattattctgacatttcacattcttaaaataaagtggcctaactgacctaaaacagggaatttgtacttggattaaatgtcaggaattgtgaaaaactgagtttaaatgtagttggctaaggtgtatgtaaacattggTCTTATTCTGGGTTATTGTCCTGGTGAAATGTGAAACTCTTATCCAGGCGGTCAACAGACTGAATATGTTTTACCTGGGCTTTGCACCATTTTTCTTTTGACTCTGCTAGTATTGTGGAGTGACTGCAATGTTGTTTATCTTTTTTCCCCCCATCTGAGCCAAGGAACTCTAGATATTTCACAATCACCATGGCCTCGCGGTGACATTGCATTACCTTCCTCTCCGGCAGCTCAGTTAGCATAGATGGACAGATCTTTGTGTCGTATGGAGGATGTGATAAATCATTCACAGcttaattattaacttgaccatgcttaaaggaCCCTCTTCTGATCTGTAGGGGTAGCTTTGAGGTTAAATATTTGCTTGAAATCTATCACAAATATGGGTATTTATTCTGAAATAATGTAAACAAATGTTGTTGCACAAAGAGATGGACTCCATTACATTTATTTAGTGACTAGTTAAGGACATTACTGCAATTTTGAATGGATTAGGTTTGCCACAGGAAAGGGGGTGAATATGTATGCATTCAAGCAGAAATTCATTTTTAGAACATTTCTATATTTTGTCTCTCCCTTTAAAGAGGAGGTAGGATGTGCAGATCAGTGAAAATAAAATGACAATGTTATTCATTTTTGTATTTAACGCAACATGTGAAAACTGCAATTGAAGTGAATACTATTGCCTATGATGTTTTTGTACCATGTTAAATTGTTTGGTATATATTGTAGAAAAAATATGAGAATTCAGATATTTTCACTCCTGTGTAACACGGAATGGTTGCCAGAAATGTATATGCACCAACACCACTTTTGAAATATGCAACAACACATTGCCAAACATTGACC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2336629 True 2147 lncRNA 0.40 2 3278882 3281824
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Neighbor

gene id symbol gene type direction distance location
LOC110507346 eif2a coding downstream 23769 3247810 ~ 3255113 (-)
tsen34 tsen34 coding downstream 38649 3237401 ~ 3240233 (-)
LOC118944748 NA coding downstream 317384 2956640 ~ 2961498 (-)
LOC110507338 LOC106603753 coding downstream 322294 2945922 ~ 2956588 (-)
LOC110507043 LOC106603827 coding downstream 338035 2936528 ~ 2940847 (-)
LOC110507348 LOC106580655 coding upstream 668 3282492 ~ 3308039 (-)
LOC110507349 LOC106580654 coding upstream 33261 3315085 ~ 3349977 (-)
gdpd1 gdpd1 coding upstream 76645 3358469 ~ 3384597 (-)
LOC110507355 LOC104924156 coding upstream 203455 3485279 ~ 3517446 (-)
LOC110507356 LOC106580682 coding upstream 257205 3539029 ~ 3718487 (-)
G2042533 NA non-coding downstream 13758 3264811 ~ 3265124 (-)
G2042287 NA non-coding downstream 31573 3247110 ~ 3247309 (-)
G2042291 NA non-coding downstream 32300 3246293 ~ 3246582 (-)
G2042283 NA non-coding downstream 46606 3232065 ~ 3232276 (-)
G2042282 NA non-coding downstream 47642 3230886 ~ 3231240 (-)
G2042546 NA non-coding upstream 5391 3287215 ~ 3287451 (-)
G2042552 NA non-coding upstream 30680 3312504 ~ 3313527 (-)
G2042585 NA non-coding upstream 71526 3353350 ~ 3366019 (-)
G2042603 NA non-coding upstream 101948 3383772 ~ 3389518 (-)
G2042657 NA non-coding upstream 237173 3518997 ~ 3519303 (-)
G2041885 NA other downstream 379494 2898987 ~ 2899388 (-)
G2041883 NA other downstream 382491 2895576 ~ 2896391 (-)
LOC110507298 spcs2 other downstream 2508145 769005 ~ 776178 (-)
G2042608 NA other upstream 118755 3400579 ~ 3402997 (-)
G2043460 NA other upstream 1061775 4343599 ~ 4348409 (-)
G2043483 NA other upstream 1097110 4378934 ~ 4379429 (-)
G2043518 NA other upstream 1132241 4414065 ~ 4414423 (-)

Expression

G2042542 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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G2042542 Expression in each Bioproject

Bar chart with 21 bars.
G2042542 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network