G2045133


Basic Information

Item Value
gene id G2045133
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5825536 ~ 5825771 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2339416
TATACTGTTATTACAGAACAGTCAAGATGGTGCCATATTTAACAGTATTAAAAGGCAAGTGTTTAACAATGGTGCTAGTCAGTGTACATATCCAACTGTGGTACTCCAGTGTTCAGGTTGTGGTCCTGGTCTCGCCCTATTTTGGGGTTAAATGGGGGACTTAATGACCGCAGCTCTTCGCGGTGATGGTCGAGACTGAGCGCTCGGAGCGGTCAGATGGAGCGCTGAAACGCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2339416 True 236 lncRNA 0.48 1 5825536 5825771

Neighbor

gene id symbol gene type direction distance location
snrpa snrpa coding upstream 24023 5798613 ~ 5801513 (+)
LOC110507392 itpkc coding upstream 31098 5769612 ~ 5794438 (+)
LOC110507055 lxn coding upstream 61280 5756607 ~ 5764256 (+)
LOC110507391 arcn1 coding upstream 74397 5741262 ~ 5751139 (+)
LOC110507053 rnf26 coding upstream 313788 5505817 ~ 5511748 (+)
LOC110507397 sfr16 coding downstream 48920 5874691 ~ 5896127 (+)
LOC110507398 znf296 coding downstream 71437 5897208 ~ 5910058 (+)
LOC110507399 LOC106612489 coding downstream 104997 5930768 ~ 5957003 (+)
LOC110507400 LOC106612489 coding downstream 134226 5959997 ~ 5993183 (+)
LOC110507403 fosb coding downstream 176944 6002715 ~ 6007384 (+)
G2045132 NA non-coding upstream 1654 5823682 ~ 5823882 (+)
G2045130 NA non-coding upstream 4847 5820288 ~ 5820689 (+)
G2045124 NA non-coding upstream 10766 5814296 ~ 5814770 (+)
G2045106 NA non-coding upstream 29039 5795997 ~ 5796497 (+)
G2045114 NA non-coding upstream 48969 5776329 ~ 5776567 (+)
G2045140 NA non-coding downstream 22081 5847852 ~ 5848596 (+)
G2045268 NA non-coding downstream 110568 5936339 ~ 5936640 (+)
G2045272 NA non-coding downstream 125280 5951051 ~ 5951352 (+)
G2045273 NA non-coding downstream 125933 5951704 ~ 5953046 (+)
LOC110507374 spa17 other upstream 1132664 4685868 ~ 4692872 (+)
G2043193 NA other upstream 1419410 4405458 ~ 4406126 (+)
G2040882 NA other upstream 2986609 2834096 ~ 2838927 (+)
LOC110507334 LOC106612406 other upstream 3010195 2813649 ~ 2815411 (+)
G2040863 NA other upstream 3023535 2799781 ~ 2802001 (+)
G2045522 NA other downstream 669062 6494833 ~ 6495134 (+)
G2045655 NA other downstream 866773 6692544 ~ 6693044 (+)
G2045665 NA other downstream 893993 6719764 ~ 6720692 (+)

Expression


Co-expression Network