G2045223 (LOC106612485)


Basic Information

Item Value
gene id G2045223
gene name LOC106612485
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5868575 ~ 5870139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2339541
CAGCCCCAGAcgaatggaaggagagagaggacaaataGCGCAAAGTAAAACAGCGACATTCAGAGACAAACCACAGTACAAAAAAAACCCCCAATATCAATATGTACAACATATATACAACAGAGCTATTTTACACACAggtataaaaaacatttgacatcttTGACAACCGCAGTGTGTTACAGAGACCGCACAGGCAACAGTGTTGTGTTTTAACTCCGTTCTCTCATGGTTCAAATGGATTGGGGTCAGGCTCTACTCTCTTGTCTGACCtttccctcttttttttttttttttaaatctaaagcTTGCATTCATTGATTCTTTTTTGCTCTTTTGTTGCTCCTTCagtcattttctctctccctcctggcaACAGGCATGATGGTCTGTAATgcttatcacacacacacctcgcactGTCACGCGTACACACACCTCGCACTGACCCGCGTACACACACCTCGCACTGACACACgcagacacaaagacacacacacacaataattacACCACAGTTTATCCTTCAATAATTAATGTGGAAATGGACTAGTTGGAATTAAAAATCACTTTGCCCTTCCCTCGCATCCCCTGTCAGTTGCCTTCCAGCCCAGGAGGCCACAGTGCAGGGCCACAGTCTCTGTAGAGGTTCAGTTACAGATACCACTAGCAGGCCATCCAGGCCTTCCAGGGCAACCAGGGCAGTGGGGTGCCTACAGAGGGATATTAACACCTGGGGAATGGCTCAAATGGCTCCTCACAGTTGTTCCCATAAAACACAGAGACCCTCAGACACAAGCCAGACTCTAACTCAAGGCCAACCTTCATAAGATTAGCTCCGGGGTCAGCAGGTCAGAAGTGGTTAAAGTTCACCGCCATGCTGTTTCTTGATGATCTGCTTAGCAACCCCGTAGGCCCAGCATTCTACACCAATAATATATGCTATTTAGCAGATGACAATCTCAGCTCACAAAAGATGAGGAGTCAACTCAGAGAGGGATGGGTCGGGTGAGGTCATcaccacaggaacctatgcagcATGGCACAGCGCTGGGGTCCAGGGCCAGGCAGAGAGAAGTGGGCGCAAAAATAATAAAAGCCTCTGACAGTTCAAAGGTCACACCTCCAGTTCCTGATTGTCTGAGTAGTGGAAGCGGTTGAGCTTCTCCCTCTCCAGGTTGGAGATGTCCTGTTTGGCAGCGGGGGTTGAGGGTTTGAGTGCAGGGGAGGGGTGTGAGGGGGCCGGGGAGGGGGGCAGAGTGAGCTCGATCTCCTCGCAGCAGCGCAGTACAGGGACAGGGGTGTGGGCGGTGGTGTTGGGGGTGAGAGGGGGCAGGAGGGGTGCGGGGCGGTCCAGGTTTCGGACGAGGGTGACCAACTCCCTCTGGTTGTTGATGCCCTCCTCCTGGGGCCCGCCCTGCGTTTTTTTCCGTCGTCGGTGGAGacgggagaggaagagagcgcaAGCTGCGCAGCCGCACGCCATTAGTAACGCTGACACACCCACCAACACCATGTAGAGATTGACCCCTCCACGAGCCGGGT
>TU2339546
TAAAACAGCGACATTCAGAGACAAACCACAGTACAAAAAAAACCCCCAATATCAATATGTACAACATATATACAACAGAGCTATTTTACACACAggtataaaaaacatttgacatcttTGACAACCGCAGTGTGTTACAGAGACCGCACAGGCAACAGTGTTGTGTTTTAACTCCGTTCTCTCATGGTTCAAATGGATTGGGGTCAGGCTCTACTCTCTTGTCTGACCtttccctcttttttttttttttttaaatctaaagcTTGCATTCATTGATTCTTTTTTGCTCTTTTGTTGCTCCTTCagtcattttctctctccctcctggcaACAGGCATGATGGTCTGTAATgcttatcacacacacacctcgcactGTCACGCGTACACACACCTCGCACTGACCCGCGTACACACACCTCGCACTGACACACgcagacacaaagacacacacacacaataattacACCACAGTTTATCCTTCAATAATTAATGTGGAAATGGACTAGTTGGAATTAAAAATCACTTTGCCCTTCCCTCGCATCCCCTGTCAGTTGCCTTCCAGCCCAGGAGGCCACAGTGCAGGGCCACAGTCTCTGTAGAGGTTCAGTTACAGATACCACTAGCAGGCCATCCAGGCCTTCCAGGGCAACCAGGGCAGTGGGGTGCCTACAGAGGGATATTAACACCTGGGGAATGGCTCAAATGGCTCCTCACAGTTGTTCCCATAAAACACAGAGACCCTCAGACACAAGCCAGACTCTAACTCAAGGCCAACCTTCATAAGATTAGCTCCGGGGTCAGCAGGTCAGAAGTGGTTAAAGTTCACCGCCATGCTGTTTCTTGATGATCTGCTTAGCAACCCCGTAGGCCCAGCATTCTACACCAATAATATATGCTATTTAGCAGATGACAATCTCAGCTCACAAAAGATGAGGAGTCAACTCAGAGAGGGATGGGTCGGGTGAGGTCATcaccacaggaacctatgcagcATGGCACAGCGCTGGGGTCCAGGGCCAGGCAGAGAGAAGTGGGCGCAAAAATAATAAAAGCCTCTGACAGTTCAAAGGTCACACCTCCAGTTCCTGATTGTCTGAGTAGTGGAAGCGGTTGAGCTTCTCCCTCTCCAGGTTGGAGATGTCCTGTTTGGCAGCGGGGGTTGAGG

Function

NR:

description
protein jagged-1b-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2339541 False 1545 TUCP 0.51 2 5868575 5870139
TU2339546 True 1167 lncRNA 0.47 2 5868908 5870094

Neighbor

gene id symbol gene type direction distance location
c27h19orf54 clg01h19orf54 coding downstream 70416 5795135 ~ 5798492 (-)
LOC118944669 gfm1 coding downstream 102076 5759611 ~ 5766832 (-)
LOC110507390 LOC106612480 coding downstream 134543 5720390 ~ 5734365 (-)
LOC110507389 LOC105011778 coding downstream 158819 5679726 ~ 5710089 (-)
LOC110507260 nlrx1 coding downstream 232010 5635480 ~ 5636898 (-)
LOC110507406 map3k10 coding upstream 198330 6068424 ~ 6105009 (-)
LOC110507409 LOC106612510 coding upstream 352833 6222927 ~ 6224524 (-)
LOC110507410 LOC106612495 coding upstream 358019 6228113 ~ 6235871 (-)
LOC110507423 NA coding upstream 461183 6331277 ~ 6334277 (-)
LOC110507420 mrpl28 coding upstream 479050 6349144 ~ 6351899 (-)
G2045204 NA non-coding downstream 43405 5825289 ~ 5825503 (-)
G2045203 NA non-coding downstream 43670 5825009 ~ 5825238 (-)
G2045202 NA non-coding downstream 45362 5822688 ~ 5823546 (-)
G2045197 NA non-coding downstream 53685 5814971 ~ 5815223 (-)
G2045193 NA non-coding downstream 60232 5808386 ~ 5808676 (-)
G2045224 NA non-coding upstream 778 5870872 ~ 5871086 (-)
G2045227 sfr16 non-coding upstream 18281 5888375 ~ 5896110 (-)
G2045235 NA non-coding upstream 27400 5897494 ~ 5904911 (-)
G2045707 NA non-coding upstream 67770 5937864 ~ 5938243 (-)
G2045709 NA non-coding upstream 70947 5941041 ~ 5941284 (-)
kmt2a kmt2a other downstream 327275 5531877 ~ 5586139 (-)
G2043518 NA other downstream 1454485 4414065 ~ 4414423 (-)
G2043483 NA other downstream 1489479 4378934 ~ 4379429 (-)
G2043460 NA other downstream 1520499 4343599 ~ 4348409 (-)
LOC110507356 LOC106580682 other downstream 2327155 3539029 ~ 3718487 (-)
LOC110507421 gemin7 other upstream 619628 6489704 ~ 6491119 (-)
LOC110507418 NA other upstream 632321 6501784 ~ 6512110 (-)
LOC110507058 egln2 other upstream 1122289 6992367 ~ 7028249 (-)
LOC110507059 dscaml1 other upstream 1311991 7182085 ~ 7411701 (-)

Expression


Co-expression Network