Gene
RNA
| Item | Value |
|---|---|
| gene id | G2045718 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048591.1 |
| NCBI id | CM023245.2 |
| chromosome length | 51556237 |
| location | 5949012 ~ 5949246 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: calpain-1 catalytic subunit-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2340109 | True | 235 | lncRNA | 0.47 | 1 | 5949012 | 5949246 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| c27h19orf54 | clg01h19orf54 | coding | downstream | 150520 | 5795135 ~ 5798492 (-) |
| LOC118944669 | gfm1 | coding | downstream | 182180 | 5759611 ~ 5766832 (-) |
| LOC110507390 | LOC106612480 | coding | downstream | 214647 | 5720390 ~ 5734365 (-) |
| LOC110507389 | LOC105011778 | coding | downstream | 238923 | 5679726 ~ 5710089 (-) |
| LOC110507260 | nlrx1 | coding | downstream | 312114 | 5635480 ~ 5636898 (-) |
| LOC110507406 | map3k10 | coding | upstream | 119178 | 6068424 ~ 6105009 (-) |
| LOC110507409 | LOC106612510 | coding | upstream | 273681 | 6222927 ~ 6224524 (-) |
| LOC110507410 | LOC106612495 | coding | upstream | 278867 | 6228113 ~ 6235871 (-) |
| LOC110507423 | NA | coding | upstream | 382031 | 6331277 ~ 6334277 (-) |
| LOC110507420 | mrpl28 | coding | upstream | 399898 | 6349144 ~ 6351899 (-) |
| G2045717 | NA | non-coding | downstream | 65 | 5948558 ~ 5948947 (-) |
| G2045713 | NA | non-coding | downstream | 1278 | 5947286 ~ 5947734 (-) |
| G2045712 | NA | non-coding | downstream | 2748 | 5945080 ~ 5946264 (-) |
| G2045709 | NA | non-coding | downstream | 7728 | 5941041 ~ 5941284 (-) |
| G2045707 | NA | non-coding | downstream | 10769 | 5937864 ~ 5938243 (-) |
| G2045719 | NA | non-coding | upstream | 318 | 5949564 ~ 5949817 (-) |
| G2045723 | NA | non-coding | upstream | 4439 | 5953685 ~ 5953998 (-) |
| G2045725 | NA | non-coding | upstream | 12212 | 5961458 ~ 5961988 (-) |
| G2045715 | NA | non-coding | upstream | 112902 | 6062148 ~ 6066528 (-) |
| G2045869 | NA | non-coding | upstream | 275941 | 6225187 ~ 6225889 (-) |
| G2045223 | LOC106612485 | other | downstream | 78873 | 5868575 ~ 5870139 (-) |
| kmt2a | kmt2a | other | downstream | 407379 | 5531877 ~ 5586139 (-) |
| G2043518 | NA | other | downstream | 1534589 | 4414065 ~ 4414423 (-) |
| G2043483 | NA | other | downstream | 1569583 | 4378934 ~ 4379429 (-) |
| G2043460 | NA | other | downstream | 1600603 | 4343599 ~ 4348409 (-) |
| LOC110507421 | gemin7 | other | upstream | 540476 | 6489704 ~ 6491119 (-) |
| LOC110507418 | NA | other | upstream | 553169 | 6501784 ~ 6512110 (-) |
| LOC110507058 | egln2 | other | upstream | 1043137 | 6992367 ~ 7028249 (-) |
| LOC110507059 | dscaml1 | other | upstream | 1232839 | 7182085 ~ 7411701 (-) |
