G2045391


Basic Information

Item Value
gene id G2045391
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6225188 ~ 6226090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2339758
CCCTTTACTCGCTATTAAAAAGTACATTAAAAAAATTCATATCTTTGGATAACTCAGCtgaaggttgtgtgtgtgtgtgtgtgtaggagattGTGCACAAACAGCCTTTGGAGCACCACACACTAAAAGAGAAAAACCACTACATGTAGACAAGGGTTGGGCTCATggataaacaaaacacacacacacactcctttagtGTCCAACTCATGCACAGTATCGTATACAAAAACCGCTCCGAACCAACAAAAAAAGTCCAAACACCAATAAAAAACAACTTGCAACATTCCTTTGGCACGTGAATGCTACAGGTATTAACATCCTATTCAGATTGTACGTGTATAATATCATTTGAGAAGTGGTGATGTCATCATTATCTACAGtagtggccaaaagttgagaatgacacaaatattaattttcaaagtctgctgactcagtttgtatgatggcaatttgcatatactccagaatgttatgatgagtgatcagatgaattgcaattaattgcaaagtccctatttgccatgcaaattaatgGAATCCCCCAAaataacatttccactgcatttcagccctgccacaaaaggaccagttgACATCATGTtggtgattctctcgttaacacaggtgtgagtgttgacaaggctggagatcactctgtcatgctgattgagtttgaataacagactggaagcttcaaatggaaggtggtgcttggaatcattgttcttcctctgtcaatcattgtTACCTGCAAGGCAACATGTggtgtcatcattgctttgcacaaaaagggcttcacaggcaaggatattgctgccagtaagattgcacctaaatcaaccatttatcggatcatcaagaacttcaagga

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2339758 True 877 lncRNA 0.39 2 6225188 6226090

Neighbor

gene id symbol gene type direction distance location
qpctla LOC105011981 coding upstream 2166 6217939 ~ 6223022 (+)
LOC110507407 sipa1l3 coding upstream 17621 6112520 ~ 6207567 (+)
LOC110507405 LOC106612492 coding upstream 160118 6028163 ~ 6065070 (+)
LOC110507404 cssa09h19orf47 coding upstream 203951 6012401 ~ 6021237 (+)
LOC110507403 fosb coding upstream 217804 6002715 ~ 6007384 (+)
LOC110507411 tbcb coding downstream 14390 6240480 ~ 6246883 (+)
LOC110507412 clptm1 coding downstream 21525 6247615 ~ 6265219 (+)
LOC110507416 NA coding downstream 69748 6295838 ~ 6324480 (+)
LOC110507414 relb coding downstream 108242 6334332 ~ 6341809 (+)
LOC110507417 NA coding downstream 303665 6529755 ~ 6569243 (+)
G2045277 NA non-coding upstream 213296 6007974 ~ 6011892 (+)
LOC110507399 LOC106612489 non-coding upstream 269744 5930768 ~ 5957003 (+)
G2045273 NA non-coding upstream 272142 5951704 ~ 5953046 (+)
G2045272 NA non-coding upstream 273836 5951051 ~ 5951352 (+)
G2045268 NA non-coding upstream 288548 5936339 ~ 5936640 (+)
G2045453 NA non-coding downstream 123756 6349846 ~ 6350342 (+)
G2045506 NA non-coding downstream 225942 6452032 ~ 6452234 (+)
G2045520 NA non-coding downstream 266004 6492094 ~ 6492423 (+)
G2045525 NA non-coding downstream 272239 6498329 ~ 6498532 (+)
LOC110507398 znf296 other upstream 317949 5897208 ~ 5910058 (+)
LOC110507397 sfr16 other upstream 329075 5874691 ~ 5896127 (+)
LOC110507374 spa17 other upstream 1532316 4685868 ~ 4692872 (+)
G2043193 NA other upstream 1819062 4405458 ~ 4406126 (+)
G2040882 NA other upstream 3386261 2834096 ~ 2838927 (+)
G2045522 NA other downstream 268743 6494833 ~ 6495134 (+)
G2045655 NA other downstream 466454 6692544 ~ 6693044 (+)
G2045665 NA other downstream 493674 6719764 ~ 6720692 (+)
G2046345 NA other downstream 1019716 7245806 ~ 7251575 (+)
G2046384 LOC106612398 other downstream 1030541 7256631 ~ 7258230 (+)

Expression


Co-expression Network