G2045879


Basic Information

Item Value
gene id G2045879
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6245005 ~ 6246876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2340288
GTAATACTTTGTTTTATTATGCATAAGATACCATTACACTTTGGCACATCAACACCTTTGAGATTTCATAAAAACAGATGTACAAGATTTGCCAACTCTGGGCATGTTAGCTGCTGACAACATCTTGGGAAAAATACAATTCAATAAAAAAGGAACGAATTAATCAATTGCTTTTGTATCCACATTTTCTCTTCTGAAACTCACTGAATCAGGAGTGACACAACAAATGACAGATCACATGCGTTCATGAGTCAAACTGTTAGAAGTGGCGATGAGGATTAGTACAATGAAGCTCAGACAAGACGTGATATCTACATGAAAAGTGCATTGTCACCACCTGGGCAGCCGGTTTGAACTGTATGCTGTCAATGTGCACAACTGATGTTTCGACATTctaatcaaatcttattggtcacatacacatggttagcagatgttaatgcaagtgtagcgaaatgcttgtgcttctagttccgacagtgcagtaatatataacaaatacaaaataatgacctaatacacacaaatctaaagggatggaataagattATGTacgtataaatatatggatgagcaatgaccacGCGTCACAGGCAAGATGCAATACattgtataaaatacagtatatacatatgagaagagtaTGTAAgatataaacattattaaagtggcattattaaagtaactagtgatccatttattaaagtggccaatgatttcaagtctgtatgtaggcagtagCTGTGttggttgtttaacagtctgtgatggccttgagatagctgTTTTTCCCCAGTCGGTCCCagctgatgcacctgtactgaccttgccttctggatggtggcggggtgaacaggcagtggctcgggtggttgttgtccttgattatctttttggccttcctgtgacattgggtgctgtaggtgtcctggagggcaggtagtttgcccccagtgatgcgttgtacagaccgcacgatcctctggagagccttgcggttgtggtaGGGTGTTAGAAGCAGTGTAAGTTTCCAGAATCTAAAACAGGGACAcgacacacaaaaacaaacagctTCTATGGTACAATAACCAATGAACTAACATATTCAAATAAACTGAACATTTTGCCACTAGTCAGAAGAACAAATATATATGTTGTTGTTGCTTGAATTCTTGCATTCAAAAGCATGGGATTTATTTGGGATGATAATTGACATTTGATGAACATTGTTGTGATTTTTATGACTGCCTATTATTCATATAGAATCTAGGATGTGATGGGCAATTCAGGTTCAACTCAAAATTCAGAGGACATCAATTTAGAAACGCTTGCTTTCTACATCCACCGAATAAAAGGACATTTACATTAAATACAGCGACAATGTATTTGTAACAATGCAAAAACATTGTGCTTTTCTCATCTCTCCTCATTCAATATACAGTAAATtccacttttatttttttttgctagGGACGTCTGTCACGACGTCTCTagcacggagatgcagtgccttagaccgctgtgccacaaGAGATGTCATACGCTAGAGTCGGTCCTAGGTGATACTGCATCCTTCCCCAGTTGCAGCTCTCTATAGTCCAACCCATACCTCCCTGACcagcacaaaacaaaataaagttATTAATCGCAATGACACTGTCCCTCGCCCCGGGTTCGTAATCAGACTGGAGGTCTATGTTGAACCCATCTGCCCACACCCTTTGACAGGGTGACAGCATCACAGTCCTACATCTCGTCCAGATGAAAGTCTTCCTCTAGGAAGTGCCCCACGGTCTTTGTGCGGGGCCTGACAAACGCAACGTACGTTCAAAGTATCACTTCTCCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2340288 True 1846 lncRNA 0.41 2 6245005 6246876

Neighbor

gene id symbol gene type direction distance location
LOC110507410 LOC106612495 coding downstream 9134 6228113 ~ 6235871 (-)
LOC110507409 LOC106612510 coding downstream 20481 6222927 ~ 6224524 (-)
LOC110507406 map3k10 coding downstream 139996 6068424 ~ 6105009 (-)
c27h19orf54 clg01h19orf54 coding downstream 446513 5795135 ~ 5798492 (-)
LOC118944669 gfm1 coding downstream 478173 5759611 ~ 5766832 (-)
LOC110507423 NA coding upstream 84401 6331277 ~ 6334277 (-)
LOC110507420 mrpl28 coding upstream 102268 6349144 ~ 6351899 (-)
trnastop-uca-4 NA coding upstream 105447 6352323 ~ 6352409 (-)
LOC110507422 LOC106612386 coding upstream 111297 6358173 ~ 6363321 (-)
LOC110507413 ppp1r37 coding upstream 120167 6367043 ~ 6419712 (-)
G2045869 NA non-coding downstream 19116 6225187 ~ 6225889 (-)
G2045715 NA non-coding downstream 178477 6062148 ~ 6066528 (-)
G2045725 NA non-coding downstream 283017 5961458 ~ 5961988 (-)
G2045723 NA non-coding downstream 291007 5953685 ~ 5953998 (-)
G2045719 NA non-coding downstream 295188 5949564 ~ 5949817 (-)
G2045878 NA non-coding upstream 16281 6263157 ~ 6265208 (-)
G2046000 NA non-coding upstream 249384 6496260 ~ 6496468 (-)
G2046009 NA non-coding upstream 271599 6518475 ~ 6518688 (-)
G2046014 NA non-coding upstream 278060 6524936 ~ 6525187 (-)
G2045223 LOC106612485 other downstream 374866 5868575 ~ 5870139 (-)
kmt2a kmt2a other downstream 703372 5531877 ~ 5586139 (-)
G2043518 NA other downstream 1830582 4414065 ~ 4414423 (-)
G2043483 NA other downstream 1865576 4378934 ~ 4379429 (-)
LOC110507421 gemin7 other upstream 242846 6489704 ~ 6491119 (-)
LOC110507418 NA other upstream 255539 6501784 ~ 6512110 (-)
LOC110507058 egln2 other upstream 745507 6992367 ~ 7028249 (-)
LOC110507059 dscaml1 other upstream 935209 7182085 ~ 7411701 (-)
fxyd6 fxyd6 other upstream 1195797 7442657 ~ 7468560 (-)

Expression


Co-expression Network