G2045506


Basic Information

Item Value
gene id G2045506
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6452032 ~ 6452234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2339883
CTCGAGTATACACCACAGGTTATTTTACTAAGATTTATGAAGTCAAGAATCTACTAGCTAGCAGGAACTTTAGCTAGATTGCCTATGTTCTCAATGTACACAAAAGCAACTTGTGTAATTACAGGATCATTTATTACAACCACTAGCAAAAATGATAATGAGTACTTGCGTAAAACTGGACCAAAGCTATTGTACTTACACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2339883 True 203 lncRNA 0.34 1 6452032 6452234

Neighbor

gene id symbol gene type direction distance location
LOC110507414 relb coding upstream 110223 6334332 ~ 6341809 (+)
LOC110507416 NA coding upstream 127552 6295838 ~ 6324480 (+)
LOC110507412 clptm1 coding upstream 186813 6247615 ~ 6265219 (+)
LOC110507411 tbcb coding upstream 205149 6240480 ~ 6246883 (+)
qpctla LOC105011981 coding upstream 229010 6217939 ~ 6223022 (+)
LOC110507417 NA coding downstream 77521 6529755 ~ 6569243 (+)
calm3a LOC107670363 coding downstream 124195 6576429 ~ 6592527 (+)
rtn2a NA coding downstream 254430 6706664 ~ 6719264 (+)
rhoub LOC106612375 coding downstream 273435 6725669 ~ 6734192 (+)
rab4b LOC106612374 coding downstream 341685 6793919 ~ 6811036 (+)
G2045453 NA non-coding upstream 101690 6349846 ~ 6350342 (+)
G2045391 NA non-coding upstream 225942 6225188 ~ 6226090 (+)
G2045277 NA non-coding upstream 440140 6007974 ~ 6011892 (+)
LOC110507399 LOC106612489 non-coding upstream 496588 5930768 ~ 5957003 (+)
G2045520 NA non-coding downstream 39860 6492094 ~ 6492423 (+)
G2045525 NA non-coding downstream 46095 6498329 ~ 6498532 (+)
G2045540 NA non-coding downstream 68365 6520599 ~ 6520820 (+)
G2045544 NA non-coding downstream 72702 6524936 ~ 6525170 (+)
G2045550 NA non-coding downstream 83448 6535682 ~ 6535889 (+)
LOC110507398 znf296 other upstream 544793 5897208 ~ 5910058 (+)
LOC110507397 sfr16 other upstream 555919 5874691 ~ 5896127 (+)
LOC110507374 spa17 other upstream 1759160 4685868 ~ 4692872 (+)
G2043193 NA other upstream 2045906 4405458 ~ 4406126 (+)
G2040882 NA other upstream 3613105 2834096 ~ 2838927 (+)
G2045522 NA other downstream 42599 6494833 ~ 6495134 (+)
G2045655 NA other downstream 240310 6692544 ~ 6693044 (+)
G2045665 NA other downstream 267530 6719764 ~ 6720692 (+)
G2046345 NA other downstream 793572 7245806 ~ 7251575 (+)
G2046384 LOC106612398 other downstream 804397 7256631 ~ 7258230 (+)

Expression


Co-expression Network