G2046221 (LOC106612388)


Basic Information

Item Value
gene id G2046221
gene name LOC106612388
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6924942 ~ 6925160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2340662
CTTCTAGAttttctttctctgcctctaagctttctctctgtttctccaacatctctctcttctttttgTTCTCAGCTAACAGCTTAGTACTCTCCACTGTCACCTCTCCTATCTCGGCCAAGTTCAGTATGTTCTGCACCTTCAGCTTTGCCATCTTGAGCTCCATCTTCTTTCTGTCTGACACAacgctttctctctgtttctcaaacgactctctct

Function

NR:

description
PREDICTED: trichohyalin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2340662 True 219 lncRNA 0.44 1 6924942 6925160

Neighbor

gene id symbol gene type direction distance location
arhgap35a LOC106612372 coding upstream 17353 6812849 ~ 6907589 (+)
rab4b LOC106612374 coding upstream 113906 6793919 ~ 6811036 (+)
rhoub LOC106612375 coding upstream 190750 6725669 ~ 6734192 (+)
rtn2a NA coding upstream 205678 6706664 ~ 6719264 (+)
calm3a LOC107670363 coding upstream 332415 6576429 ~ 6592527 (+)
LOC110507056 npas1 coding downstream 11749 6936909 ~ 6974629 (+)
LOC110507436 slc1a5 coding downstream 162888 7088048 ~ 7101257 (+)
LOC110507437 strn4 coding downstream 182805 7107965 ~ 7133262 (+)
LOC110507439 prkd2 coding downstream 210362 7135522 ~ 7183437 (+)
LOC110507440 LOC106612400 coding downstream 272290 7197450 ~ 7209528 (+)
G2046220 NA non-coding upstream 1733 6923009 ~ 6923209 (+)
G2046187 NA non-coding upstream 88343 6835574 ~ 6836599 (+)
G2045703 NA non-coding upstream 134364 6790044 ~ 6790578 (+)
G2045696 NA non-coding upstream 140312 6784214 ~ 6784630 (+)
G2045695 NA non-coding upstream 140794 6783892 ~ 6784148 (+)
G2046224 NA non-coding downstream 3480 6928640 ~ 6928940 (+)
G2046225 NA non-coding downstream 3947 6929107 ~ 6929372 (+)
G2046226 NA non-coding downstream 5239 6930399 ~ 6930622 (+)
G2046229 NA non-coding downstream 9800 6934960 ~ 6935264 (+)
G2046245 NA non-coding downstream 41760 6966920 ~ 6978348 (+)
G2045665 NA other upstream 204250 6719764 ~ 6720692 (+)
G2045655 NA other upstream 231898 6692544 ~ 6693044 (+)
G2045522 NA other upstream 429808 6494833 ~ 6495134 (+)
LOC110507398 znf296 other upstream 1017703 5897208 ~ 5910058 (+)
LOC110507397 sfr16 other upstream 1028829 5874691 ~ 5896127 (+)
G2046345 NA other downstream 320646 7245806 ~ 7251575 (+)
G2046384 LOC106612398 other downstream 331471 7256631 ~ 7258230 (+)
si:cabz01090165.1 LOC106580728 other downstream 1682333 8606550 ~ 8741534 (+)
G2049339 LOC100380674 other downstream 2482465 9407625 ~ 9408571 (+)
G2049657 NA other downstream 2862646 9787806 ~ 9788115 (+)

Expression


Co-expression Network