G2046345


Basic Information

Item Value
gene id G2046345
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 7245806 ~ 7251575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2340811
CAGAGAATGTGCGGGTGCCTgtgattttttgtgtgtgtgtgtgtgcgcgcatacaGAGCAGTGTGGTTCTGTGTTTTCCACTTCCCACGAAGCATCCTACTGCGCACTCCACCATTTGGATCTGTCAGAGGGTACAGGATCTCTCTTTCACGGCTGGACCGAGGACAGTAAGGGAAATCAGCAACATCACCGCGGCCTATCCCAAGCATCAAGGAATAGTTGTCACGATGATAGTCACCATGTTAACAGCTATGTACATGGTGGTCAGAGTAGTAGAAAAGATAGGAGTGCTATTTGCTCGCAGTGATCCTCCGTTGCCTTTCCTGGTGACCCACCCTCTGCCCTGGCAGGTGCACCACGTGTCACAAAAAAGGAGGAGCAGCGCAACAGCTGAGTGCGACGGCCAGACGAGGAACAGCGTAGGAGTGTTCAGAAAGAGTGAGTCTGAGACCAAACAATGTTTGaaagagtgttttttttttaaaaatgtgcaaATCTAGAAAACACTTCCCAGGTGCTGAATCCGAGAGGAAAAAAAtgtagatatatttttttaattggcaCATTGGTATGCTGCTCCCACGGTGTTGAATGAGAAATGGACAAAGGTTTGACTAGGCCTTCCTCATTACAACCCATTAACTGGATGAGACATCCTCTTCTCTTTAAAACACTTCGGGAGCAGCGTACGAGTGTGTGGATTCATATTTTTCTTATCTATGACACTGAACAGTCCACGGCAATATATCTAAAGTAATGAAGTATAATCACCTACCCACATAGAGGCTTTGCTACATATAATACGTATAACATCCTACATATAACTTCATAACCCCTGACGTTAAAGACCACTCGTGCCTTACTACTCATGTACTTGCTACATTGTTACACACAGTAAATTCGGACATCTTCCCCAATGCAACGCTGGCTGTTGCTGTTGCCACTTTGACTGTACCCTGTCTCCTGACGTGCGATCGGAAAGACTCTGCGTGCGGCAACGGGTGTGCAGCGGCGCCTCTCAGCCCCACTCTGCCCGTGGAGAAAGCTGCCGCCACCATTCAGAACCAGTTCAGGAAGTACCAGCAGAAGAAGAAGGAGACCAAGTAGAACCACACCCGCACCACCGGAGCTCTGcatgacagacagacggacacaaatacacaaacagacagacaagacagagtcCTCTCTGAAATGTAAAGAGCAGAGGACCAAAGATGTCATCTAACTCCGTTAGCCATTTTTCATAGCATGTATACCAAAGGAAATAGCATAGACATAGATTGACTTTATATGAAagaccagtcaaacgtttggacacacctgctcattcaagtattttctttatttttgctattttctacattgtagaatattaatgaagacatcaaaactatgaaatatcacaaatggaatcatgtagtaaccaaaaaagtgttaaacaaatcaaaatatattttagattcttcaaagctactttgccttgatgacagctttgcacactctttcaaccagcttcacctggaatgcttttacaacaatCGTGAAAGAGTTCCAACAtttgctgaacacttgttggctgcttttctttcagtctgcggtccaactcatcccaaaccatctcaaatgggttgaagtcaggtgattgtggagaacatgtcatctgatgcagcactccatcactctccttcttggtcaaatagcccttacacagcctggaggtgtgttgggtcatagtcctgttgaaaaacaaatgacagtcccactaagcacaaaccagatgggatggcgtattgctgcagaatggtaaccatgctggttaagtgtgccttgaattctaaataaatcactgacagtttcaccagcaaagcacccccaccccatcacacctcctcctccatgcttcacggtaagAACCACacttgcggagatcatccgttcacctactctgcgtctcacaaagacacggcggttggaaccaaaaatctctaatttggactcatcagaccaaaggacagatttccacaggtctaatgtccattgcccgtGTCACTTGCAAGTCTCTTATttttattgatgtcctttagtagtggtttctttgcagcaattcaaccatgaaggcctgattcacacagtctcttctgaacagttgatgttgagatgtgtctgttgcttgaactcatttatttgggctgcaatttctgagtctggtaactaatgaacgtagcctctgtagcagaggtaactctgggtcttcctttcttgtggcggatCTCATTGAGAGCAAGTTTAAACACAGCAGgtcatggtttttgcgactgcacttgaggaAACTTTCCAAGTTCTTGAAATTACCTTCAtggcttaaagtaatgacggactgtcgtttctctttccttatttgagctgttaccaaatagggctatcttctacaTACCacccactaccttgtcacaacacaattaaATTGCTCAAactaccacatgaagttgattgagagaatgccaagtgtccaaagctgtcatcagggttggctactttgaagaacctcaaataaaaaaaaatatttttgatttgtttaacacttttttggttactacaatgactccatatgtgttcatagtgtttatgtcttcactattattatacaatgtagaacatagtaaaaaatcAACTCTGGAATTGGTACGTGTGtccaaattttgactggtactgtgtgtcgaACATGACACAGACATTCAATCACTCATTTAAGTGACAAAATGTTACACACATCCTGTGTTTCACTATGTGACTAAAAATATATGTATACATGAATCATAGGTCCTTTATATGCTTATCGACATGTATTTGTGAAGATATTTacgtgcggcaggtagcctagtggttagagcgttgggcaagtaaccaaaaggttgttagatcgaatccctgagctgacaaggtaaacatctgtcgttctgccccctgaacaaggcagttcacccactgttcctaggccgtcattgtaaataagaacttgttcttcactgacttgtctagtttaataaaggttaaataaaatgtgcgAGAGTATGTTTGCATGTGTGCGTCAGCATCTGTGTGAGAGCATGCACATTGTACTGTATGCATTACAGTACTATCAAATAGATGGATTGTAAAATAACATATATGTCCAACAAACTCCATTAAACCCCTCAGTAATACTGGA
>TU2340813
CAGAGAATGTGCGGGTGCCTgtgattttttgtgtgtgtgtgtgtgcgcgcatacaGAGCAGTGTGGTTCTGTGTTTTCCACTTCCCACGAAGCATCCTACTGCGCACTCCACCATTTGGATCTGTCAGAGGGTACAGGATCTCTCTTTCACGGCTGGACCGAGGACAGTAAGGGAAATCAGCAACATCACCGCGGCCTATCCCAAGCATCAAGGAATAGTTGTCACGATGATAGTCACCATGTTAACAGCTATGTACATGGTGGTCAGAGTAGTAGAAAAGATAGGAGTGCTATTTGCTCGCAGTGATCCTCCGTTGCCTTTCCTGGTGACCCACCCTCTGCCCTGGCAGGTGCACCACGTGTCACAAAAAAGGAGGAGCAGCGCAACAGCTGAGTGCGACGGCCAGACGAGGAACAGCGTAGGAGTGTTCAGAAAGAACTCTGCGTGCGGCAACGGGTGTGCAGCGGCGCCTCTCAGCCCCACTCTGCCCGTGGAGAAAGCTGCCGCCACCATTCAGAACCAGTTCAGGAAGTACCAGCAGAAGAAGAAGGAGACCAAGTAGAACCACACCCGCACCACCGGAGCTCTGcatgacagacagacggacacaaatacacaaacagacagacaagacagagtcCTCTCTGAAATGTAAAGAGCAGAGGACCAAAGATGTCATCTAACTCCGTTAGCCATTTTTCATAGCATGTATACCAAAGGAAATAGCATAGACATAGATTGACTTTATATGAAagaccagtcaaacgtttggacacacctgctcattcaagtattttctttatttttgctattttctacattgtagaatattaatgaagacatcaaaactatgaaatatcacaaatggaatcatgtagtaaccaaaaaagtgttaaacaaatcaaaatatattttagattcttcaaagctactttgccttgatgacagctttgcacactctttcaaccagcttcacctggaatgcttttacaacaatCGTGAAAGAGTTCCAACAtttgctgaacacttgttggctgcttttctttcagtctgcggtccaactcatcccaaaccatctcaaatgggttgaagtcaggtgattgtggagaacatgtcatctgatgcagcactccatcactctccttcttggtcaaatagcccttacacagcctggaggtgtgttgggtcatagtcctgttgaaaaacaaatgacagtcccactaagcacaaaccagatgggatggcgtattgctgcagaatggtaaccatgctggttaagtgtgccttgaattctaaataaatcactgacagtttcaccagcaaagcacccccaccccatcacacctcctcctccatgcttcacggtaagAACCACacttgcggagatcatccgttcacctactctgcgtctcacaaagacacggcggttggaaccaaaaatctctaatttggactcatcagaccaaaggacagatttccacaggtctaatgtccattgcccgtGTCACTTGCAAGTCTCTTATttttattgatgtcctttagtagtggtttctttgcagcaattcaaccatgaaggcctgattcacacagtctcttctgaacagttgatgttgagatgtgtctgttgcttgaactcatttatttgggctgcaatttctgagtctggtaactaatgaacgtagcctctgtagcagaggtaactctgggtcttcctttcttgtggcggatCTCATTGAGAGCAAGTTTAAACACAGCAGgtcatggtttttgcgactgcacttgaggaAACTTTCCAAGTTCTTGAAATTACCTTCAtggcttaaagtaatgacggactgtcgtttctctttccttatttgagctgttaccaaatagggctatcttctacaTACCacccactaccttgtcacaacacaattaaATTGCTCAAactaccacatgaagttgattgagagaatgccaagtgtccaaagctgtcatcagggttggctactttgaagaacctcaaataaaaaaaaatatttttgatttgtttaacacttttttggttactacaatgactccatatgtgttcatagtgtttatgtcttcactattattatacaatgtagaacatagtaaaaaatcAACTCTGGAATTGGTACGTGTGtccaaattttgactggtactgtgtgtcgaACATGACACAGACATTCAATCACTCATTTAAGTGACAAAATGTTACACACATCCTGTGTTTCACTATGTGACTAAAAATATATGTATACATGAATCATAGGTCCTTTATATGCTTATCGACATGTATTTGTGAAGATATTTacgtgcggcaggtagcctagtggttagagcgttgggcaagtaaccaaaaggttgttagatcgaatccctgagctgacaaggtaaacatctgtcgttctgccccctgaacaaggcagttcacccactgttcctaggccgtcattgtaaataagaacttgttcttcactgacttgtctagtttaataaaggttaaataaaatgtgcgAGAGTATGTTTGCATGTGTGCGTCAGCATCTGTGTGAGAGCATGCACATTGTACTGTATGCATTACAGTACTATCAAATAGATGGATTGTAAAATAACATATATGTCCAACAAACTCCATTAAACCCCTCAGTAATACTGGA
>TU2340814
CAGAGAATGTGCGGGTGCCTgtgattttttgtgtgtgtgtgtgtgcgcgcatacaGAGCAGTGTGGTTCTGTGTTTTCCACTTCCCACGAAGCATCCTACTGCGCACTCCACCATTTGGATCTGTCAGAGGGTACAGGATCTCTCTTTCACGGCTGGACCGAGGACAGTAAGGGAAATCAGCAACATCACCGCGGCCTATCCCAAGCATCAAGGAATAGTTGTCACGATGATAGTCACCATGTTAACAGCTATGTACATGGTGGTCAGAGTAGTAGAAAAGATAGGAGTGCTATTTGCTCGCAGTGATCCTCCGTTGCCTTTCCTGGTGACCCACCCTCTGCCCTGGCAGGTGCACCACGTGTCACAAAAAAGGAGGAGCAGCGCAACAGCTGAGTGCGACGGCCAGACGAGGAACAGCGTAGGAGTGTTCAGAAAGAACTCTGCGTGCGGCAACGGGTGTGCAGCGGCGCCTCTCAGCCCCACTCTGCCCGTGGAGAAAGCTGCCGCCACCATTCAGAACCAGTTCAGGAAGTACCAGCAGAAGAAGAAGGAGACCAAGTAGAACCACACCCGCACCACCGGAGCTCTGcatgacagacagacggacacaaatacacaaacagacagacaagacagagtcCTCTCTGAAATGTAAAGAGCAGAGGACCAAAGATGTCATCTAACTCCGTTAGCCATTTTTCATAGCATGTATACCAAAGGAAATAGCATAGACATAGATTGACTTTATATGAAagaccagtcaaacgtttggacacacctgctcattcaagtattttctttatttttgctattttctacattgtagaatattaatgaagacatcaaaactatgaaatatcacaaatggaatcatgtagtaaccaaaaaagtgttaaacaaatcaaaatatattttagattcttcaaagctactttgccttgatgacagctttgcacactctttcaaccagcttcacctggaatgcttttacaacaatCGTGAAAGAGTTCCAACAtttgctgaacacttgttggctgcttttctttcagtctgcggtccaactcatcccaaaccatctcaaatgggttgaagtcaggtgattgtggagaacatgtcatctgatgcagcactccatcactctccttcttggtcaaatagcccttacacagcctggaggtgtgttgggtcatagtcctgttgaaaaacaaatgacagtcccactaagcacaaaccagatgggatggcgtattgctgcagaatggtaaccatgctggttaagtgtgccttgaattctaaataaatcactgacagtttcaccagcaaagcacccccaccccatcacacctcctcctccatgcttcacggtaagAACCACacttgcggagatcatccgttcacctactctgcgtctcacaaagacacggcggttggaaccaaaaatctctaatttggactcatcagaccaaaggacagatttccacaggtctaatgtccattgcccgtGTCACTTGCAAGTCTCTTATttttattgatgtcctttagtagtggtttctttgcagcaattcaaccatgaaggcctgattcacacagtctcttctgaacagttgatgttgagatgtgtctgttgcttgaactcatttatttgggctgcaatttctgagtctggtaactaatgaacgtagcctctgtagcagaggtaactctgggtcttcctttcttgtggcggatCTCATTGAGAGCAAGTTTAAACACAGCAGgtcatggtttttgcgactgcacttgaggaAACTTTCCAAGTTCTTGAAATTACCTTCAtggcttaaagtaatgacggactgtcgtttctctttccttatttgagctgttaccaaatagggctatcttctacaTACCacccactaccttgtcacaacacaattaaATTGCTCAAATGcattgaggaaagaaattccacatattaacttatgacaaggcacacctgttaattaaaatggtttttccaggtgactaccacatgaagttgattgagagaatgccaagtgtccaaagctgtcatcagggttggctactttgaagaacctcaaataaaaaaaaatatttttgatttgtttaacacttttttggttactacaatgactccatatgtgttcatagtgtttatgtcttcactattattatacaatgtagaacatagtaaaaaatcAACTCTGGAATTGGTACGTGTGtccaaattttgactggtactgtgtgtcgaACATGACACAGACATTCAATCACTCATTTAAGTGACAAAATGTTACACACATCCTGTGTTTCACTATGTGACTAAAAATATATGTATACATGAATCATAGGTCCTTTATATGCTTATCGACATGTATTTGTGAAGATATTTacgtgcggcaggtagcctagtggttagagcgttgggcaagtaaccaaaaggttgttagatcgaatccctgagctgacaaggtaaacatctgtcgttctgccccctgaacaaggcagttcacccactgttcctaggccgtcattgtaaataagaacttgttcttcactgacttgtctagtttaataaaggttaaataaaatgtgcgAGAGTATGTTTGCATGTGTGCGTCAGCATCTGTGTGAGAGCATGCACATTGTACTGTATGCATTACAGTACTATCAAATAGATGGATTGTAAAATAACATATATGTCCAACAAACTCCATTAAACCCCTCAGTAATACTGGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2340811 False 3211 lncRNA 0.42 4 7245806 7251575
TU2340813 False 2667 TUCP 0.43 5 7245806 7251575
TU2340814 True 2743 TUCP 0.43 4 7245806 7251575

Neighbor

gene id symbol gene type direction distance location
LOC110507440 LOC106612400 coding upstream 36278 7197450 ~ 7209528 (+)
LOC110507439 prkd2 coding upstream 62369 7135522 ~ 7183437 (+)
LOC110507437 strn4 coding upstream 112544 7107965 ~ 7133262 (+)
LOC110507436 slc1a5 coding upstream 144549 7088048 ~ 7101257 (+)
LOC110507056 npas1 coding upstream 271177 6936909 ~ 6974629 (+)
LOC110507445 LOC106612744 coding downstream 246415 7497990 ~ 7502256 (+)
LOC110507446 LOC106612727 coding downstream 264249 7515824 ~ 7531443 (+)
LOC110507452 LOC106580723 coding downstream 968269 8219844 ~ 8222436 (+)
LOC110507457 bl1s3 coding downstream 1035873 8287448 ~ 8292186 (+)
si:cabz01090165.1 LOC106580728 coding downstream 1354975 8606550 ~ 8741534 (+)
G2046332 NA non-coding upstream 148777 7096823 ~ 7097029 (+)
G2046325 NA non-coding upstream 160643 7084688 ~ 7085163 (+)
G2046263 NA non-coding upstream 172835 7008556 ~ 7072971 (+)
G2046310 NA non-coding upstream 186288 7058748 ~ 7059518 (+)
G2046463 NA non-coding downstream 170047 7421622 ~ 7421912 (+)
G2046464 NA non-coding downstream 170437 7422012 ~ 7422225 (+)
G2046471 NA non-coding downstream 177966 7429541 ~ 7431697 (+)
G2046472 NA non-coding downstream 180475 7432050 ~ 7432444 (+)
G2046473 NA non-coding downstream 181220 7432795 ~ 7433133 (+)
G2045665 NA other upstream 525114 6719764 ~ 6720692 (+)
G2045655 NA other upstream 552762 6692544 ~ 6693044 (+)
G2045522 NA other upstream 750672 6494833 ~ 6495134 (+)
LOC110507398 znf296 other upstream 1338567 5897208 ~ 5910058 (+)
LOC110507397 sfr16 other upstream 1349693 5874691 ~ 5896127 (+)
G2046384 LOC106612398 other downstream 5056 7256631 ~ 7258230 (+)
G2049339 LOC100380674 other downstream 2156050 9407625 ~ 9408571 (+)
G2049657 NA other downstream 2536231 9787806 ~ 9788115 (+)
LOC110507067 LOC106580782 other downstream 3027535 10251889 ~ 10282483 (+)

Expression


Co-expression Network