G2046384 (LOC106612398)


Basic Information

Item Value
gene id G2046384
gene name LOC106612398
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 7256631 ~ 7258230 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2340853
CTGCTCACCCTAACCATGCTTAGAGGCCTTTACATTACACCAACCTATAGGATCATTCTAATCAAGAGCAGGTCTCATACTCACTTTTGCCAGTCCACTCGCTCTTGTTGGCGCGGTGGGGGATGGGCACGGCTACGTTGGTAGGTCTTCCGCGGTCATATTCCTGGGGTTTGGGTGGCGAGGCGGTGAAGCGACACAGGCCCGTCTCGGACGGCGTGCTCATGGAGGTCATGCTGTCGCCGTTGTCGTTGGTGCCCGTGGTCATCTGGTCTGAGGAACTGTCGGAGATGAAGCACTCGGTGATCTCAAACTTGGCGTGCTGCAGGTGCTCCTCAAGCTTGGCGTGTTCGTAGGCCCGCGCCAGCTCCTCGTAGGTGGAGGACGCGCTCTCTGTGGACACCATGCTGTTACGCCCCTTATCTgatgacaaagagagagggagaaagagcgggagagagcgacagagtgacagagagagagagagagagagttggtgttGTACATGAAATGCCCAAATCTTACACCATCTCCTTGCactacagtgtgtatgtatgtagccTATGTTTTGGGTGGCTCACTTGTGTCCTTCGTATATgtctgtatgtatgcatgtgtcaatactgtgtgtgtgttacaagaaagtgtgtgtgtcatgagtgtgtgtgtgtgtgtgtgtgtgtgtgcaagataTGCCAGGCTCACCCGTGTCCTGTGAGAGGCTGGCGCTGTAGCTGTCGCTCTCGGTGACGGTGATGCCATGCTGGGAGCCCACGGTGCGCCAGTCGGAGGTGAGGGTACGGGCGGGCGTAGACGACTGGCACTTGGTCAAGGTCCACTGGCTGGAGTAGCGGTTCCTCGTACTGTGGGCCGACTTCACGCTCTTCCTCGACACCGGGTCTaccgggggagagagggagggaggagagggaagagagggaggaaggaggtgggagaaagggaggagaacaAAAGAGTCAGCAAGTTGAAGGCAATGATGGAAGGAATGGACAAGATAGAATAGAACTCTACGATGTAGGGCAGTTAGGGCTCTCCACTTACTGGTCCCTGGTCTGATATCGGACATGTCAATCAGAGGGCCGGTGTTCTGGATGAGGGCGGGGTGATGCACAGACACGCCCGTACAGAAGCTCTGTGGATTCACATTCTGGCTGAACTCAGTGTCCGTCACTGGGATGGTGGCTTTGTCTTCACCTAGCAGAGGGGTTGACAGAAGCAACAATTATTCACGACTGATGAGTCATACTCATTCATGAACACACATTTGCATTATAGCGCAGGCCGAAAAGAGTAATAACATCTGTATCAGGTAGGCACTCATcaaaacacagcaacacacacagacatatacacacacacacagacatatacacacacggcACCGACCGATCTGCTTGATGCCTTCCTTGTCCTCGATGAGCAGCTGGACTCTGGGGATATCGATGTGGAGTCGGGGGCCCTGGGGGGGCCCTTTCACAGGGGTGTCAAAGCTCCGGTTATTCTTACTGCTCCAGG

Function

NR:

description
Down syndrome cell adhesion molecule-like protein 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2340853 True 1533 TUCP 0.54 2 7256631 7258230

Neighbor

gene id symbol gene type direction distance location
LOC110507440 LOC106612400 coding upstream 47103 7197450 ~ 7209528 (+)
LOC110507439 prkd2 coding upstream 73194 7135522 ~ 7183437 (+)
LOC110507437 strn4 coding upstream 123369 7107965 ~ 7133262 (+)
LOC110507436 slc1a5 coding upstream 155374 7088048 ~ 7101257 (+)
LOC110507056 npas1 coding upstream 282002 6936909 ~ 6974629 (+)
LOC110507445 LOC106612744 coding downstream 239760 7497990 ~ 7502256 (+)
LOC110507446 LOC106612727 coding downstream 257594 7515824 ~ 7531443 (+)
LOC110507452 LOC106580723 coding downstream 961614 8219844 ~ 8222436 (+)
LOC110507457 bl1s3 coding downstream 1029218 8287448 ~ 8292186 (+)
si:cabz01090165.1 LOC106580728 coding downstream 1348320 8606550 ~ 8741534 (+)
G2046345 NA non-coding upstream 5056 7245806 ~ 7251575 (+)
G2046332 NA non-coding upstream 159602 7096823 ~ 7097029 (+)
G2046325 NA non-coding upstream 171468 7084688 ~ 7085163 (+)
G2046263 NA non-coding upstream 183660 7008556 ~ 7072971 (+)
G2046463 NA non-coding downstream 163392 7421622 ~ 7421912 (+)
G2046464 NA non-coding downstream 163782 7422012 ~ 7422225 (+)
G2046471 NA non-coding downstream 171311 7429541 ~ 7431697 (+)
G2046472 NA non-coding downstream 173820 7432050 ~ 7432444 (+)
G2046473 NA non-coding downstream 174565 7432795 ~ 7433133 (+)
G2045665 NA other upstream 535939 6719764 ~ 6720692 (+)
G2045655 NA other upstream 563587 6692544 ~ 6693044 (+)
G2045522 NA other upstream 761497 6494833 ~ 6495134 (+)
LOC110507398 znf296 other upstream 1349392 5897208 ~ 5910058 (+)
G2049339 LOC100380674 other downstream 2149395 9407625 ~ 9408571 (+)
G2049657 NA other downstream 2529576 9787806 ~ 9788115 (+)
LOC110507067 LOC106580782 other downstream 3020880 10251889 ~ 10282483 (+)
LOC110507523 LOC106580787 other downstream 3130771 10384807 ~ 10390951 (+)

Expression


Co-expression Network