G2049072


Basic Information

Item Value
gene id G2049072
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 9135555 ~ 9139211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2343711
gaaagtgacaaaaaaacatatttattcCGGTGAGAAAAGGTCATGCCAAAACAACAGGAGAATAAATGACCGACCCAAAACAGGACACAAACAGTCTGGAAAAATACAAACAATACCatccacaacagaacagagaaacaagcccgcacaaaagctgGTGGGCATAACAGGCTTCAATAGCCCTAAACCAAACCcgaaacaagaaacaggtgaaaccaataagacataaccaacagaaaagggaatcggtggcagctagtagaccggtgacgatgaccgccgagcgccgcccgaacaggaaggggagccaccttcggtggaagtcgtgacaaactgacatgcctagttaaataaaaaggtatgtaaacaaatctgtgcacaaaatttgagagaaataagctttttgtgcatatgaaacatttctgggatcttttattttgaaacatgggaccaacacattatgtttacatttttgttcagtgtagtagtcagaatggatcactatttaattaaatatctcaATTTGTAGCGAACTTTCAAATTGAACTTAATCATAAACTAATTTGAGGCCAAAACGGGCTTCTAAACAAAAATGTGGTTTGGCCGTTCTGGAGATCGAAATAGGCTTTCGACACCGCTAAGTTGCTACGTAGTAACAGAGCAGCAGAGTTCGTGACATCATGCTCCAGACATCAATAATGTAATAACCTAAAATAACTCTAATGGCATGCATATTAACAAACACTTTGAATTTGCATCCATTGCCACAACAGACTAGCAAGGGGGGGTTACTATTGAACTTCCATTTTGACCTTGCAAACAGTgtcgacagagagggagaaaaaacgGCTCAATTTGAAGACACCTTTCAGTCATGCGAATAGACAAATTGTAATTATCACAAAAATATTCAACATGATTTTTTACTCCTTATCCCAGGATAGACCAGGCTACTTTGCTTTAGAGATTAAACCAGACCCATTAAGATGGAGATGGAACCAGACTCATGTCAGacgctcactcactcaccccaCCCATTGGTCCAAGGCCAAAATCCATGTTTTTTCCACTACTTTCAATTATCTGCCTTTACAATCCTCATATGGAAGTGTTGCACCTTTTCTTTTTTAGGTCAACCAATACAAGAAACATTTTAATACAACGTTGCCTTTATGGCTCcattttacatacagttgaagttagaaCTTTACATACATGTAgattggaatcattaaaacttgtttttcaaccacaccacaaattacttgttaacaaactatagttttggcaagtcggttaggacatctactttgtgcatgacacaagtcattttcccaacaattgtttacagaatatttcacttataattcactgtatcacgattccagtgggtcagaaatttacatacactaagctgactgtgcctttcaacagcttggaaaattccagaaaatgtcatggctttagaagcttctgataggctaattgacatcatttgagtcaattggaggtgtatctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaataaaaagaaatcagcaaagaactaagaaaaaaaatggtagacctccgcaagtctggttaattcatttccaaatgcctaaaggtaccacgttcatctgtacaaacaatagtatgcaagtataaacaccatgggaccacgctgccgtcatactgctcaggaaggagatgcgttctgtctcctagagatgaacgtactttggtgtgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaaccggtacaaaagtatctatacccacaataaaacaagtcctatactgacataacctgaaaggccactcagcaaggaagaagccactgctccaaaaccgtcataaaaagccagactacagtttgcaactgcacatggggacaaagatcgtactttttggaaaaatgtcctctggtctgatgaaaccaaaatagaatggaccatcgttatgtttggagggaaaagggggaggcttgcaagctgaagaacatcttcccaaccgtgaagcaggggggtggcagcatcatgttgtgggggtcctttgctgcgggagggactggtgcatgtcACAAAataatggcatcatgagggaaaattgtagatatattgaagcaacatcaagacatcagtcaggaagttaaagcttggtcgcaaagggatcttccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggtttaaggacaacaaagtcaaggtattggagtggccatcacaaagccctgacctcaatcctatagaacatttctgggcagaactgaaaaagcttgtctgagcaaagaggcctacaaacctgactcagttacaccagttctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagcttgtggttggctacccaaaatatttgacccaagtttaaattgtttaaggcaatgccaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaataaaagctgaaataaatctctactattctgacatttcacatttcaaagtggcgatcctaactgacctaagacagggaatttttactaggattaaatgtcaggaattgtgaaaaacagtctaaatgtagttggctaaggtgtatgtaaacttccaacttcaactgtatgttctgGTCTTGTGTAGATATTACAGATAACAGTCCCAAACTGTTGTCATATCTAAGTGTGTTGGAATTCAAATGTCACAACCTCCAACATATGTCTGCTGGGAAACAGTAGTATGGGCACTCCAACATTAGTCCCCTGGTTTAATGAACTGTCCAATTACATTCCTTTAGTAATATCAAATAAGGATTTGGGAATGTGGTGTGGCATGTAGTCCACTATTACTGAAGCATGACACTTGATATTAATGAAAAAAACAGAGTGAATTTAGTTTAGTAATTTTGTTATTACATTGGTTAAAA
>TU2343714
TGTTATTACATTGGTTAAAATTATTACATTTATAAGTTACCCACTTCAATGTGATAATCAATGCATACTGTAATAATTACATTATGCACAAAAACTTTAGCATTTTAAACATTGGCAATCTACATTATCAGCATTTATTAAATTATAAATGAAAAAGCTATTACATTATTGGCTGTTTTTACATTGTCAGTTGCTACATTGTTCAAGATGGACAAACTTCATATGCTAAAGTACATACTTTCACAATGGCAGAAAATCCTAATATTTAACTATAGACAACTACACATCAGAACACAGATACTTAGTTTTTATTTTCAATCCTTTTATTCCCTAAATTTGTTATCCTTCAGATGATATACTTAATGTATTTGAAACACAAGATCATGTTACACAACaggcaaaaacaaagccatgggGGTCCTGGGAATGTGCTCCATCATATGACTCAAGACAAAGTCTCAAGCAATGGCTTTTTCACCTAATTACTGGGGAGGGGCAACAAACTCTTTCAAAGATGGCCACTATAATGAGTTTGTTTGATTTTGAAACATCCAATATTTCTGTACGACCTTCCTTGATCAACCCTGACCTAAAACCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2343711 False 3077 lncRNA 0.40 1 9135555 9138631
TU2343714 True 600 lncRNA 0.32 1 9138612 9139211

Neighbor

gene id symbol gene type direction distance location
LOC110507469 sertad3 coding upstream 4820 9128031 ~ 9130735 (+)
LOC110507468 blvrb coding upstream 9243 9123596 ~ 9126312 (+)
esrrd LOC106580735 coding upstream 91876 9036968 ~ 9043679 (+)
LOC110507061 ltbp4 coding upstream 102447 8958406 ~ 9033108 (+)
LOC110507459 LOC106580729 coding upstream 343742 8788596 ~ 8791813 (+)
LOC110507063 hipk4 coding downstream 70543 9209754 ~ 9212063 (+)
LOC110507479 LOC106580747 coding downstream 132630 9271841 ~ 9273709 (+)
LOC110507484 LOC106580753 coding downstream 367274 9506485 ~ 9538992 (+)
LOC110507488 LOC106580752 coding downstream 457945 9597156 ~ 9619474 (+)
LOC110507489 LOC106580757 coding downstream 485703 9624914 ~ 9640110 (+)
G2048957 NA non-coding upstream 13375 9121768 ~ 9122180 (+)
G2048942 sptbn4 non-coding upstream 37269 9097438 ~ 9098286 (+)
G2048926 sptbn4 non-coding upstream 65433 9069826 ~ 9070122 (+)
G2048925 sptbn4 non-coding upstream 66255 9069042 ~ 9069300 (+)
G2048924 NA non-coding upstream 66811 9068497 ~ 9068744 (+)
G2049089 NA non-coding downstream 16210 9155421 ~ 9156365 (+)
G2049091 NA non-coding downstream 22437 9161648 ~ 9161987 (+)
G2049095 NA non-coding downstream 31238 9170449 ~ 9170649 (+)
G2049073 pld3 non-coding downstream 73139 9212350 ~ 9224788 (+)
G2049107 NA non-coding downstream 114280 9253491 ~ 9254055 (+)
si:cabz01090165.1 LOC106580728 other upstream 411252 8606550 ~ 8741534 (+)
G2046384 LOC106612398 other upstream 1877325 7256631 ~ 7258230 (+)
G2046345 NA other upstream 1883980 7245806 ~ 7251575 (+)
G2045665 NA other upstream 2414863 6719764 ~ 6720692 (+)
G2045655 NA other upstream 2442511 6692544 ~ 6693044 (+)
G2049339 LOC100380674 other downstream 268414 9407625 ~ 9408571 (+)
G2049657 NA other downstream 648595 9787806 ~ 9788115 (+)
LOC110507067 LOC106580782 other downstream 1139899 10251889 ~ 10282483 (+)
LOC110507523 LOC106580787 other downstream 1249790 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 other downstream 1267162 10391240 ~ 10417311 (+)

Expression


Co-expression Network