G2049073 (pld3)


Basic Information

Item Value
gene id G2049073
gene name pld3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 9212350 ~ 9224788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2343716
GTTTAAATTCAATTTATTAGGGACATTACTACAAAGGAAGAAGTGTGTACAAAATGTGATCAATATTGTACAGTAACAGTGCTCGCCAAATAATACACAGTGCAGTGCTTTTAAACACTTAAGTACTTTGACAGTTGCTGTAACATTCTCCACTGTACTAGTCATATTAGACACTCCACGCAGTGCAAATTCCAGAAAAAGAAATTCTGGACTTAATTGCACACATGAAATCAGTTGCTGCACAATCCTATGGGAAACATACTAGTTTTAAAGCTAGGATTCAGAATGATTGAATTAAAAAAAACTAGTCTAGGCTGCATAGAAAAACGAGGcacaacacaccaaacatacaTTATAAAGAATAAAAGGATCAAACCAGCATGCCAAGAAACATCAGTCCAAACATTCAACACGTAATATAGCAACCTCCCTGAGATTCACTGGGATTTATTCCCGAGGAGTTGAAGCTGATAATGCCTTATTGTTAACACACAGGCTTGTCTTTTGATCATTGATGTGATAGACCCATTGACGCTGCAGAGGTCAGCATCGTTTTACCCACCTTCTGCTACAGTACATATCTCCTGCTACTCCTGCAATtataacaattttaaaaaatgtgctgCAATTTAAGAAATCATCCCAGAAACACCTGCTGATTAGAATCCATTCCTCCCCATGCTGGCTTGGAGGACACAGGCCCTGTAACATTCTAGAGTGGGGGTTCCAAACTCCAGGCTTCGAGTATTTCAAACAGTAGACTTTTGTATTGTAGCCCCAGACAAGCACACCAGATTGAACTTGCcaactaatcatcaggccctcaaGGAGTTGAATCCCCCCCAAATTTGCCAGAGGCTACAGCAAAAATGTGTGCAATTGGGGGTctggactggagttgggaaccccTGGTCTAGAGTGTAGTATTGTATCTAACACACCATTTTGAGGTCGGTGTGCTGGTGGATTGGGGTGCTGTAGCCAGAGTCCCAGTCCCTTTCGAACACGGCCTGTAGTTGTGCCTGGACCGTAGGCTCCACTGACTGGGCAGACGTTTGGTTCACCACCAGAGCCGATCCAGCAGTGTTCACAAAATAGTCTCCAGACCAGTTAGAGGTACCTGGTGATCAATGGGAAACACAATAACGTTGCATTTTATAGTGCATGGGATCTGACTTTGTAGGTTGTGCATAACGTCAGAGAAGTTACCTCTGGTTTTAACATCAGCAATTGTTAATTGGCATTATACAGTagcatgtgtaacggatgtgaaacggctagcttagttagcggtgtgcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagttgttccccttgctctgcaagggccgcggcttttgtggagcgatgggtaacgatgcttcgagggtgtcagttgttgatgtgtgcagaaggaccctagttcgcgcccgggtatgggcgagaggacggtctaaatttatactgttacattgatgctgttgacccggattactggttgctgcggaaaaggaggaggtcaaaaggggggtgagtgtaacggatgtgaaacggctagcttagttagcggtgtacgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagttgttccccttgctctgcaagggccgcggcttttgtggagcgatgggtaacgacacttcgtgggtgactgttgttgatgtgtgcagaaggtccctggttcgcgcccgggtatgggcgaggggacggtctaaatttatactgttacacatgacTGGTGCACGTGTTATCTAGGAGAGAGCGGAATCACCTATGTAGGCAACCTTGTCCGTCACCATGTACTTGTTATGGTTGACCCTGGCAAAGGGGATTTCTTTCTGCTTGGGATTGGCTGGCACCACAAAGAGTTTCTGTGAAACAGTGAAGAAGAGTTTAATATTTAACAATTGCTCTTGTGGAGGACCTTACCATATCAATGATGATAAGTAAAGTGCATGAGTAGCGAGAGGTCCTACTCACCACCTGGACATCCAGCTTGGCCTTGGGTTTCTGCATTGAATCCAAGGCTTTCAGGAAGGGGATCATGACAGGCGAAGTGCTGGCCCAACAGCTGATGAGCAGACGCACCTTCAGCCGCTTCTCGTATGCCACACGTCTGATCTGAGTGTCAATTTCTGCCCAGTACCGTTTGGGTCGCGAGAACTCCATGGTGGGCAGGTAGTTCATGACAGCGATGTAGATAAACTCCTGTGCGTCCTCCATCACACTGAGAATAGACTGGAGGTCTCCGGTCCTCCCAGCAGCACAGAAAGATGGTGGAGAACTTGTCAGATACACGTGGGAGGCTGTGCCGTTGAGTGGTAACTGTAGGGGCGAGTCCTTATTGTAAAGAGTGTTGAAACTGCTGGGCCAAGGGGACGGGATGGGTGTGTCTTTTTGCCCAAGGTACCAGTAGGCCTCGAAGATCTTCCCCAGGTCTGCAGCcaagcagctgcagttgtacaccACAGCCCCCAGCTCCTTCACCTGGGTAAGGGACCTCCAGTCCATGTTGGCACTGCCAATGTAGATGTGCTTCCTGTCCACCACCCAGAACTTGGTGTGAAGTACTCCAGTGGTCAAATTCCGCATGTTCACGGCTCTTACATCAGCACCAGAACTTTGTAATAGAATGAGGTCTTCGTGATGTTGGGACTCTGTTGGTGTATTTACAGCGATGCGGACAGAGAGTTTCCTAGACACCTGAGCTAGCCTATTCAGGACATCCTCACCCTGATCCGCCGTTGGCTCATGAGAGCCTGTGTCCTTGTTGGTGAGCGTCCAATAGAAAGACGCAATGTCCACGCTACTGCGAGCCTCACTAATCAGGTTTAGCCAAGCCTGGTAGATGGATGGGTTGGTGACACTAGAATTGAACTCTAACCCCTCTGGGATGCTCTCCAATAGAACGATTTTGCAGGGGTCGGTGCAGGTGTCAGTGAGAGGAAGTGGGAGCTGGAAGCCGGGCTTGTTTGGGGAGGAGTTAACCACGGGAAGCAGCAGGGTCTGGAGGAACACGGCAGCCAATAGCAGACTGACCACCCCAGTGAGACCCAGCAGACACCTATAATACATCTGTGCTTTCCTGCAGGACTCTTCTCTCCTCGACTCCACATTACACATCTCATAGGGAATATCAGAAATCATGGTTACAGAGTACTGTCTCTTTTGACAAAGTTCTTCAGGATTCCGATCAGAAAATGCAGCTCAGAAAAGGCTCTGAAATCATGCGGCCGGGCCTTGTGAAATCTTTCATGGATTAAATTACCGAATGTAAATGATCGTTAATGTTTTCACCGGTTACATTAGGCTATTGTTTTTAACAACTAAATGTAGATAAACAAAATGCAATTGCCAGAATGAGAAAATACCAGAGCAAATACTTAAAAAAGTGGGTTCGCCGTCTCGAGCGTGTGGTCATATGACCAAGCCTAAACAACCAATGAGAATCCAACCCAACGTCATATGTGAGGCATCGCATCTAACGCCTGAAAGTAGATGCCTTACATACTGATCTTGACAAGGATGCAAAAGTGCCGAGTGAGGTTGTCTTCTGCACTGTttaa

Function

symbol description
pld3 Predicted to enable catalytic activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in spinocerebellar ataxia 46. Orthologous to human PLD3 (phospholipase D family member 3).

NR:

description
phospholipase D3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2343716 True 3633 lncRNA 0.47 10 9212350 9224788

Neighbor

gene id symbol gene type direction distance location
LOC110507063 hipk4 coding upstream 287 9209754 ~ 9212063 (+)
LOC110507469 sertad3 coding upstream 81615 9128031 ~ 9130735 (+)
LOC110507468 blvrb coding upstream 86038 9123596 ~ 9126312 (+)
esrrd LOC106580735 coding upstream 168671 9036968 ~ 9043679 (+)
LOC110507061 ltbp4 coding upstream 179242 8958406 ~ 9033108 (+)
LOC110507479 LOC106580747 coding downstream 47053 9271841 ~ 9273709 (+)
LOC110507484 LOC106580753 coding downstream 281697 9506485 ~ 9538992 (+)
LOC110507488 LOC106580752 coding downstream 372368 9597156 ~ 9619474 (+)
LOC110507489 LOC106580757 coding downstream 400126 9624914 ~ 9640110 (+)
LOC110507491 LOC106580758 coding downstream 421899 9646687 ~ 9658211 (+)
G2049095 NA non-coding upstream 41701 9170449 ~ 9170649 (+)
G2049091 NA non-coding upstream 50363 9161648 ~ 9161987 (+)
G2049089 NA non-coding upstream 55985 9155421 ~ 9156365 (+)
G2049072 NA non-coding upstream 73139 9135555 ~ 9139211 (+)
G2048957 NA non-coding upstream 90170 9121768 ~ 9122180 (+)
G2049107 NA non-coding downstream 28703 9253491 ~ 9254055 (+)
G2049132 NA non-coding downstream 33245 9258033 ~ 9258407 (+)
G2049133 NA non-coding downstream 49554 9274342 ~ 9274622 (+)
G2049134 NA non-coding downstream 49900 9274688 ~ 9275166 (+)
G2049162 NA non-coding downstream 114462 9339250 ~ 9339531 (+)
si:cabz01090165.1 LOC106580728 other upstream 488047 8606550 ~ 8741534 (+)
G2046384 LOC106612398 other upstream 1954120 7256631 ~ 7258230 (+)
G2046345 NA other upstream 1960775 7245806 ~ 7251575 (+)
G2045665 NA other upstream 2491658 6719764 ~ 6720692 (+)
G2045655 NA other upstream 2519306 6692544 ~ 6693044 (+)
G2049339 LOC100380674 other downstream 182837 9407625 ~ 9408571 (+)
G2049657 NA other downstream 563018 9787806 ~ 9788115 (+)
LOC110507067 LOC106580782 other downstream 1054322 10251889 ~ 10282483 (+)
LOC110507523 LOC106580787 other downstream 1164213 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 other downstream 1181585 10391240 ~ 10417311 (+)

Expression


Co-expression Network