G2049133


Basic Information

Item Value
gene id G2049133
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 9274342 ~ 9274622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2343783
AATTGATTGCTGtagatgaaactgggtttgcacaactgaagaatttctgcacaaactgtcagaaaccgtctcagagaAGCTCAACtgcatgctcgtcatcctcaccagggtcttgacctgactgcagttaaacgtcgtaactgacttcagtgggcaaatgctcaccttcgatggccactttCACACTGGAGAAGTGCTCTTTACGGATGAAtcatggtttcaactgtaccgggcagatggcaggcagcgtgtgtgggtgagcggttttcacgttgtaaaca

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2343783 True 281 lncRNA 0.48 1 9274342 9274622

Neighbor

gene id symbol gene type direction distance location
LOC110507479 LOC106580747 coding upstream 633 9271841 ~ 9273709 (+)
LOC110507063 hipk4 coding upstream 62279 9209754 ~ 9212063 (+)
LOC110507469 sertad3 coding upstream 143607 9128031 ~ 9130735 (+)
LOC110507468 blvrb coding upstream 148030 9123596 ~ 9126312 (+)
esrrd LOC106580735 coding upstream 230663 9036968 ~ 9043679 (+)
LOC110507484 LOC106580753 coding downstream 231863 9506485 ~ 9538992 (+)
LOC110507488 LOC106580752 coding downstream 322534 9597156 ~ 9619474 (+)
LOC110507489 LOC106580757 coding downstream 350292 9624914 ~ 9640110 (+)
LOC110507491 LOC106580758 coding downstream 372065 9646687 ~ 9658211 (+)
capn4 LOC106580760 coding downstream 396142 9670764 ~ 9677392 (+)
G2049132 NA non-coding upstream 15935 9258033 ~ 9258407 (+)
G2049107 NA non-coding upstream 20287 9253491 ~ 9254055 (+)
G2049073 pld3 non-coding upstream 49554 9212350 ~ 9224788 (+)
G2049095 NA non-coding upstream 103693 9170449 ~ 9170649 (+)
G2049091 NA non-coding upstream 112355 9161648 ~ 9161987 (+)
G2049134 NA non-coding downstream 66 9274688 ~ 9275166 (+)
G2049162 NA non-coding downstream 64628 9339250 ~ 9339531 (+)
G2049166 NA non-coding downstream 69541 9344163 ~ 9344403 (+)
G2049171 NA non-coding downstream 78262 9352884 ~ 9353338 (+)
G2049345 NA non-coding downstream 144677 9419299 ~ 9420230 (+)
si:cabz01090165.1 LOC106580728 other upstream 550039 8606550 ~ 8741534 (+)
G2046384 LOC106612398 other upstream 2016112 7256631 ~ 7258230 (+)
G2046345 NA other upstream 2022767 7245806 ~ 7251575 (+)
G2045665 NA other upstream 2553650 6719764 ~ 6720692 (+)
G2045655 NA other upstream 2581298 6692544 ~ 6693044 (+)
G2049339 LOC100380674 other downstream 133003 9407625 ~ 9408571 (+)
G2049657 NA other downstream 513184 9787806 ~ 9788115 (+)
LOC110507067 LOC106580782 other downstream 1004488 10251889 ~ 10282483 (+)
LOC110507523 LOC106580787 other downstream 1114379 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 other downstream 1131751 10391240 ~ 10417311 (+)

Expression


Co-expression Network