Gene
RNA
| Item | Value |
|---|---|
| gene id | G2049345 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048591.1 |
| NCBI id | CM023245.2 |
| chromosome length | 51556237 |
| location | 9419299 ~ 9420230 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| echinoderm microtubule-associated protein-like 2 isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2344016 | True | 423 | lncRNA | 0.60 | 2 | 9419299 | 9420230 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110507479 | LOC106580747 | coding | upstream | 145590 | 9271841 ~ 9273709 (+) |
| LOC110507063 | hipk4 | coding | upstream | 207236 | 9209754 ~ 9212063 (+) |
| LOC110507469 | sertad3 | coding | upstream | 288564 | 9128031 ~ 9130735 (+) |
| LOC110507468 | blvrb | coding | upstream | 292987 | 9123596 ~ 9126312 (+) |
| esrrd | LOC106580735 | coding | upstream | 375620 | 9036968 ~ 9043679 (+) |
| LOC110507484 | LOC106580753 | coding | downstream | 86255 | 9506485 ~ 9538992 (+) |
| LOC110507488 | LOC106580752 | coding | downstream | 176926 | 9597156 ~ 9619474 (+) |
| LOC110507489 | LOC106580757 | coding | downstream | 204684 | 9624914 ~ 9640110 (+) |
| LOC110507491 | LOC106580758 | coding | downstream | 226457 | 9646687 ~ 9658211 (+) |
| capn4 | LOC106580760 | coding | downstream | 250534 | 9670764 ~ 9677392 (+) |
| G2049171 | NA | non-coding | upstream | 65961 | 9352884 ~ 9353338 (+) |
| G2049166 | NA | non-coding | upstream | 74896 | 9344163 ~ 9344403 (+) |
| G2049162 | NA | non-coding | upstream | 79768 | 9339250 ~ 9339531 (+) |
| G2049134 | NA | non-coding | upstream | 144133 | 9274688 ~ 9275166 (+) |
| G2049133 | NA | non-coding | upstream | 144677 | 9274342 ~ 9274622 (+) |
| G2049371 | NA | non-coding | downstream | 37584 | 9457814 ~ 9458137 (+) |
| G2049372 | NA | non-coding | downstream | 38090 | 9458320 ~ 9458633 (+) |
| G2049389 | NA | non-coding | downstream | 61273 | 9481503 ~ 9481721 (+) |
| G2049396 | NA | non-coding | downstream | 68136 | 9488366 ~ 9488731 (+) |
| G2049512 | NA | non-coding | downstream | 83519 | 9503749 ~ 9504034 (+) |
| G2049339 | LOC100380674 | other | upstream | 10728 | 9407625 ~ 9408571 (+) |
| si:cabz01090165.1 | LOC106580728 | other | upstream | 694996 | 8606550 ~ 8741534 (+) |
| G2046384 | LOC106612398 | other | upstream | 2161069 | 7256631 ~ 7258230 (+) |
| G2046345 | NA | other | upstream | 2167724 | 7245806 ~ 7251575 (+) |
| G2045665 | NA | other | upstream | 2698607 | 6719764 ~ 6720692 (+) |
| G2049657 | NA | other | downstream | 367576 | 9787806 ~ 9788115 (+) |
| LOC110507067 | LOC106580782 | other | downstream | 858880 | 10251889 ~ 10282483 (+) |
| LOC110507523 | LOC106580787 | other | downstream | 968771 | 10384807 ~ 10390951 (+) |
| LOC110507524 | LOC106612657 | other | downstream | 986143 | 10391240 ~ 10417311 (+) |
| rap1gap2a | LOC106580794 | other | downstream | 1155480 | 10494894 ~ 10583085 (+) |
