G2050017


Basic Information

Item Value
gene id G2050017
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 10019610 ~ 10022745 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2344770
ggtctgaggatctcatctcggtacctaatggcagtcaggctacctctggcgagcacatggagggatgtgcggcccccccaaaaaatgccgccccacaccatgactgacccaccgccaaaccggtcatgctggaggatgttgcaggcagcagaacgttctccacggcgtctccagactctgtcacgtctgtcacatgtgctcagtgtgaacctgctttcatctgtgaagagcacagggcgctagtggcgaatttgccaatcttggtgttctctggcaaattccaaacgtcctgcacggtgttgggctgtaagcacaacccccacctgtggatgtcgggccctcataccaccctcatggagtctgtttctgaccgtttgagcagacacatgctcaaatggggcggcagggtagcctagtggttagagcattcgactagtaaccggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgactcgcctagttaaataaaggtcaaataaataaataaaaatttgtggcctgctggaggtcattttgcagggctctggcagtgctcctccttgcacaaaggcggaggtagtggtcctgctgctgggttgttggcctcctccacgtctcctgatgtacctgcctgtctcctggtagcgcctccatgctctggacactacgctgacagacacagcaaaccttgccacagctcgcattgatgtgccatcctggatgagctgcactacctgagccacttgtgtgggttgtagactccgtctcatgctaccactagcgtgaaagcaccgccagcattcaaacgtgaccaaacatcagccaggaagcataggaactgagaagtggtctgtggtcaccacctgcagaaccactcctttattgggggtgtcttgctaaatgcctataatttccacctgttgtctattccatttgcacaacagcatgtgaaatttattgtcaatcagtgttgcttcctaagtggacagtttgatttcacagaagtgtgattgacttgggagttacattgtgttgtttaagtgttccctttatttttttgagcagtatatagatatatatattaaAAGGGGGAGAAATATTGTTGTGATATTCCCAATGATTTTAATGACCATATAGATAAAGCTACAAAGGATATTTTTTATGAAGACCAAGCAGTATTGCTTGGTAGGTTGTCAACTGCCACTCAAAGATGGTTATGACTAGCTATTAAGGATAATTTAAGATAACATTTAAGCTGTCAGGAATACCAGGTATTTTTATTTCTCACCAAAATATTTGTATATCTGTAGAGGTTTTTTCAGTCAGCTAAAGGATAGAAACCCAACTGTACTCCTATGTGCCTCCTCAGGtacaccatttaaaaaaaaaaaattgtttacacGAGTTTCAACACGGTTTGTAAATGTGTAGATCTCGGTTGGCTGTATTggtttaaatacattttgaattcaatgTTTCCCAGAGTAACTTTGAATCATTATCAGCATAGTGTTTTATAGATTAGAGGCTGTATTTACATGCTGCTGTACCATAGAGAAGGCCCgtgtttaaaataaataaaaaaatgctatGAGTTGAATTGATAAACAGCGCCCTCTTCTGGCTAAATGTACTGAGTTATTTACAAAAACATTACATTTTGGTATGACAGTCTACTCTTTTGACAAACTGGGTGTTTATTTAATCCCATAGGGGTCAACCCATTTACCATCATTGTAAATCGATTGCTATGGTGTGGGGGTTGGTAGATAGATAGTAGCCTATATGATGCTAACTGAAGTGTCAGCCCGAGGATGCATGTAATATCAGAGACGGGTCAGATTTTTCAAGCACCCATAACTTTATCACAGCAATCCTACAGTATGAACTCTTGCTCAAACCAATCCAATACTATCTAATCTGACAGACTGTCATGTTTCATTGGAATAACCTGTAGATGGCAGGAGAACACAAGTCAACATTTCCTTTCTCATTATATTAAGGACACCATAGAGTCAGCTTCAGGAACGTCATTAGTAAGATACAACCGCTTACAGAGCATTATTATGgctactgtagtacatcatgccGCATCTCTTTTGAGCTCCGCATCATGCTACGGACGTTAGCCTCAATTTAACAATTTTCTGTTGCTCAAAAAAACGCTTTGTGTATGTATATGCCTGTTTGTTGCTGAAGCTCCGCTGTTCCACCAGACACAGACCAACCAGGCTCAACACACCTTTGTCTACGTTTGTGAAGTAAACATGACACATTCCACCCGGGCATTGAGGACTTCTGGTCTGTAAGGTGCACATTTTAGAAATGTCTTCGTGTGTCATGATCATGGAATCAGATGGATTTGTGAAGTGAACTTTCCCCGTTTACATGATGGTTTGGTATGCGTATGCATTTAGACCTTGTAAGGGTCGTTCCCACAAAATGATTGCCTTTTGTGTCCCTTTGATATttgaagtagaaattgtgcacaactattgcattttaaaagcctgttatattaataAATGTGCCCCTTTCATATGGACTACATACATTATTCctatttaaaatcagattttttttaatgaagacTTGCGAAAGTGTAAAAATCCAGCATTTTGCACTCTGTGACGTGGGTTAAAATCTAGGAAGATTTAAaatctaggaagattttaacccacttcaTCCGCAAATTTCTCCCAAGTTTTCACATCATtgtattttgttgctttgactaAAGTCAGTCATTTCTGAAAATGATGATTTCTTTAATGTGATTAGTGAACAATTGATGTCTACCTCATTTTAAAGTCAACCCTGtaacgtgaactgaactctcgtttttACGTGGTGAAACTATTGCTTTTCAAATATAATTTTTTCTCAAaataaacattgaacatctaaccAAACATTGAACATTTAGTCAAACCATAGAGTAAAAGCTGGTTCTAGAATTTTTGGCTatgttctggtgttttgtggtggggAAATGAGTGGGTCGATCATAagatgtcaaccctgttacccatagttaGACAGGct

Function

NR:

description
transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2344770 True 3136 lncRNA 0.42 1 10019610 10022745

Neighbor

gene id symbol gene type direction distance location
LOC110507507 LOC106580771 coding upstream 673 10009512 ~ 10018937 (+)
LOC110507503 rnt2 coding upstream 181011 9835478 ~ 9838599 (+)
chp2 chp2 coding upstream 189503 9827192 ~ 9830107 (+)
LOC110507500 LOC106580764 coding upstream 240350 9770369 ~ 9779260 (+)
LOC110507499 LOC106580763 coding upstream 256862 9731766 ~ 9762748 (+)
LOC110507509 LOC106612674 coding downstream 915 10023660 ~ 10060619 (+)
LOC110507511 LOC106580774 coding downstream 39634 10057431 ~ 10079394 (+)
usp2a LOC106580775 coding downstream 57156 10079901 ~ 10121525 (+)
LOC110507512 LOC106580776 coding downstream 99196 10121941 ~ 10125425 (+)
LOC110507514 LOC106580778 coding downstream 123812 10146557 ~ 10150651 (+)
G2050046 NA non-coding upstream 11714 10007697 ~ 10007896 (+)
G2050002 NA non-coding upstream 46757 9972597 ~ 9972853 (+)
G2049999 NA non-coding upstream 48515 9970888 ~ 9971095 (+)
G2049758 NA non-coding upstream 56353 9963019 ~ 9963257 (+)
G2049707 NA non-coding upstream 132052 9882566 ~ 9887558 (+)
G2050109 NA non-coding downstream 169242 10191987 ~ 10192242 (+)
G2050122 NA non-coding downstream 191899 10214644 ~ 10214948 (+)
G2050123 NA non-coding downstream 196508 10219253 ~ 10219615 (+)
G2050164 NA non-coding downstream 289343 10312088 ~ 10371018 (+)
G2049657 NA other upstream 231495 9787806 ~ 9788115 (+)
G2049339 LOC100380674 other upstream 611039 9407625 ~ 9408571 (+)
si:cabz01090165.1 LOC106580728 other upstream 1295307 8606550 ~ 8741534 (+)
G2046384 LOC106612398 other upstream 2761380 7256631 ~ 7258230 (+)
G2046345 NA other upstream 2768035 7245806 ~ 7251575 (+)
LOC110507067 LOC106580782 other downstream 256365 10251889 ~ 10282483 (+)
LOC110507523 LOC106580787 other downstream 366256 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 other downstream 383628 10391240 ~ 10417311 (+)
rap1gap2a LOC106580794 other downstream 552965 10494894 ~ 10583085 (+)
LOC110507540 git1 other downstream 752342 10755190 ~ 10778403 (+)

Expression


Co-expression Network