G2050200 (xaf1)


Basic Information

Item Value
gene id G2050200
gene name xaf1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 10460870 ~ 10462018 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2345005
GTTGGAGGATGGTGGGGAGGGGTTATCGGGAACATAGAGGTCAGGGCAGATCTGGGCATGCTCCGGCTGGTCCCTCAGAGTGACGTAGCGTCCGCAGTCGGAGCAGCGCTCGGTGCGACTGCCACACGCCACGCTGTGCTCCGCCATGGCCGACAGCGGCAGCTCCAGCTGGCAGAACTCACAGCACTGCAGCCTTGCCTTACACTCGTCCGaCTCATGGTCCAGTAGCTGGCAACGCTCCACCTTTTTGTTGCACTTGGTGCATTTCACCTGGGTGTGCTGGTCCTGATGATGCTGCTCCAATAGCTGTCTGGGAACCGGCTCATCACAGTCTGGACACAGGCACAGGAACCGCTGGCAGTGGGACTCGTGCAAGGCAAAGTTGGACACAGCCACCTCCTTGTGACACTGGTCACAGACACGGGTTGTGTCCTCTTCCTTGTCTGCCATCG

Function

symbol description
xaf1 Predicted to enable zinc ion binding activity. Predicted to act upstream of or within apoptotic process. Orthologous to human XAF1 (XIAP associated factor 1).

NR:

description
XIAP-associated factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2345005 True 452 lncRNA 0.60 4 10460870 10462018

Neighbor

gene id symbol gene type direction distance location
LOC110507527 LOC106580793 coding upstream 4495 10451926 ~ 10456375 (+)
LOC110507525 LOC106580790 coding upstream 11256 10437149 ~ 10449614 (+)
LOC110507528 LOC106580789 coding upstream 25350 10420898 ~ 10435520 (+)
LOC110507524 LOC106612657 coding upstream 43559 10391240 ~ 10417311 (+)
LOC110507523 LOC106580787 coding upstream 69919 10384807 ~ 10390951 (+)
rap1gap2a LOC106580794 coding downstream 32876 10494894 ~ 10583085 (+)
LOC118944660 NA coding downstream 68039 10530057 ~ 10532164 (+)
LOC110507537 blmh coding downstream 125333 10587351 ~ 10605957 (+)
LOC110507068 LOC106612651 coding downstream 147846 10609864 ~ 10642920 (+)
LOC110507539 ssh2 coding downstream 215832 10677850 ~ 10714953 (+)
G2050178 NA non-coding upstream 83537 10376109 ~ 10377333 (+)
G2050164 NA non-coding upstream 89852 10312088 ~ 10371018 (+)
G2050123 NA non-coding upstream 241255 10219253 ~ 10219615 (+)
G2050122 NA non-coding upstream 245922 10214644 ~ 10214948 (+)
G2050109 NA non-coding upstream 268628 10191987 ~ 10192242 (+)
G2050234 NA non-coding downstream 53336 10515354 ~ 10515598 (+)
G2050212 NA non-coding downstream 87029 10549047 ~ 10549304 (+)
G2050281 NA non-coding downstream 188915 10650933 ~ 10739687 (+)
G2050334 NA non-coding downstream 256196 10718214 ~ 10720467 (+)
LOC110507540 git1 non-coding downstream 311808 10755190 ~ 10778403 (+)
LOC110507067 LOC106580782 other upstream 178387 10251889 ~ 10282483 (+)
G2049657 NA other upstream 672755 9787806 ~ 9788115 (+)
G2049339 LOC100380674 other upstream 1052299 9407625 ~ 9408571 (+)
G2051034 NA other downstream 530967 10992985 ~ 10993588 (+)
G2051018 LOC106580809 other downstream 1665423 12127441 ~ 12137799 (+)
nudt8 LOC106580825 other downstream 1975941 12436060 ~ 12439501 (+)

Expression


Co-expression Network