G2050376


Basic Information

Item Value
gene id G2050376
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 10812270 ~ 10814191 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2345230
gttagactgtaaactctccttccacactcacattaagcatctccaatccaaaatttaaatctagaatcggtttcctatttcgtaaacaaagcatccttcactcatgctgccaaacataccctcgtaaaactgactatcctaccgatccttgacttcggcgatgtcatttacaaaatagcccccaacactctactcagcaaattggatgcagtctatcacagtgccatccattttgccaccaaagccccatatactatccaccactgcaacctgtactctctcgttggctgaccctcgctacatatttgttgccaaatccactggctccaggtcatctataagtctttgctaggtaaagccctgcccaatctcagctcactggtcaccatagcagcatccacccgtcgcatgcgctccagcaggtttatctccctggtcactcccaaagccaattcctcctttgtatgcttttccttccagttctctgctgccaatgattggcatgaactgcaaaaatcactgaagctggagactcatatctccctcactaactttaagcaccagctgtcagagcagctcacagatcactgcacctgtacatagcccatctgtaaatagcccacccaactacctcatcccccatactgttatttatttgatttattttgctcctttgcaccccagtatctcaacttgcacactcatcttctggaaatctatcactccggtgtttaattgctacattgtaattatttcaacactatagcctatttattaccttaccttcttatcctacctcatttccaCACAcggtatatatactttttctattgtattattgaccatgtttgtttattccatgtgtcactctgttgtttgtgtcgcactgctttgatttatcttggccaggttgcagttgaacttgttctcaactagcctacctggttacataaaggtgaaaaaaatcatatatatatatatatacccaccCACCCAAAGGTTTTCTCAACAGGGGATAGTGTTCAAAGTGGGACGTAGGTACAGTGCATGTTCAGTACGAACATATTGTACTCCAACTATGCAGTGTGAAGATTAGACAAGGAATGGACTCCTAACCTGAATTGACCTAGTGAGCAGGTGCACTGGCCTAGAATAAATTAATTCCACAAAAACAAACTAGGAAAAGCAAAGCTGCACAAGATGAGACTGGGGTGCACAAAATGCATGACACAGCAAAAGCCAGGCTGTGTTTCCTTAACATGGCATCAATATTCAAGTGGACGTGAACTCTTAACAGGGGTTGTCAGGAAAGAAGAATTAAAACATTTAACGTACATATCTTGCTCACATTCTTAATCTTTTATATCGGGCGGAAAGAAAAATGGAGCGATTGCAAAATGTATCAATAATAAATCAGTGTCTTTGGATGCTGCCATTTCTGTACGGTAACTCCTCGATCACACTTGGCTGTATCCCTGTTGGGATGCATAGGAGAGGAGATGAACAGATGGGCTGTATATCTTTCTAGTGAACTTGTCAGCAGAACTGTTGGGTCACTTTTCATTTATGCATTCATGGTTTATGAAATGAACAGGACAGTAGCTTctagtaaaaacaaaaaaatggtaCACTCATATGTACGGTGTCGGCTACTGTATACATTGTCACACTTGTATTTAAGAATAACTTGAGTGTTACTGCTTTCCCAAATCAGAAGGTAGTGAGCAGGGGTGCTTTAAGATCCAGTATTCATAATATCTGATAACATACGCCAGGGTTTTATAAAATGGCGCCAGTATGTCAGAAATCAAACAATCTGAATGGCCTCTGGTAAAAGTAGGTATTCCTTACGTTGCTCAAGTCAGGAGTGACAGACATATTCTTTGGAAACGCCTGCCAACAACCCCAGGCAGTACGGAAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2345230 True 1922 lncRNA 0.42 1 10812270 10814191

Neighbor

gene id symbol gene type direction distance location
LOC110507543 NA coding upstream 264 10809948 ~ 10812006 (+)
LOC110507542 LOC106580802 coding upstream 6734 10787642 ~ 10805536 (+)
LOC110507540 git1 coding upstream 33867 10755190 ~ 10778403 (+)
LOC110507539 ssh2 coding upstream 97317 10677850 ~ 10714953 (+)
LOC110507068 LOC106612651 coding upstream 169350 10609864 ~ 10642920 (+)
LOC110507544 LOC106580804 coding downstream 729 10814920 ~ 10913222 (+)
LOC118944743 NA coding downstream 152742 10966933 ~ 10971183 (+)
LOC110507545 LOC106612642 coding downstream 157789 10971980 ~ 12125733 (+)
cd3e LOC100499597 coding downstream 1375142 12189333 ~ 12193259 (+)
LOC110507553 LOC106580818 coding downstream 1468127 12282318 ~ 12303781 (+)
G2050374 NA non-coding upstream 3057 10808912 ~ 10809213 (+)
G2050329 NA non-coding upstream 22846 10788392 ~ 10789424 (+)
G2050364 NA non-coding upstream 29195 10781908 ~ 10783075 (+)
G2050281 NA non-coding upstream 72583 10650933 ~ 10739687 (+)
G2050394 NA non-coding downstream 19962 10834153 ~ 10839672 (+)
G2050988 NA non-coding downstream 136312 10950503 ~ 10950706 (+)
G2050993 NA non-coding downstream 138808 10952999 ~ 10953232 (+)
G2050996 NA non-coding downstream 139981 10954172 ~ 10954378 (+)
rap1gap2a LOC106580794 other upstream 229185 10494894 ~ 10583085 (+)
LOC110507524 LOC106612657 other upstream 394975 10391240 ~ 10417311 (+)
LOC110507523 LOC106580787 other upstream 421369 10384807 ~ 10390951 (+)
LOC110507067 LOC106580782 other upstream 529787 10251889 ~ 10282483 (+)
G2051034 NA other downstream 178794 10992985 ~ 10993588 (+)
G2051018 LOC106580809 other downstream 1313250 12127441 ~ 12137799 (+)
nudt8 LOC106580825 other downstream 1623768 12436060 ~ 12439501 (+)
G2053443 NA other downstream 2164336 12978527 ~ 12978923 (+)
LOC110507618 LOC107659943 other downstream 2740549 13554250 ~ 13575495 (+)

Expression


Co-expression Network