G2051936


Basic Information

Item Value
gene id G2051936
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12214128 ~ 12216225 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2346930
AGTTTGGTTGGAATTCTATTTAATCATTGTTGCACTTTAGTATTTTTGtactaaaaaaaaatattaaaaaaatgaaaGGATAGAAAAAGAGAACATAGGATACAGGTGCCGAGCAGAGACCTGGTTTACAGACGATGAGGGGGAAGTCAGACAGAAACAGATAAGGAAGAAGAAAACGAGGAGGTGGTCCCTcatcagcaacacacacacacagtccctcgCTGGACCATGATGCACTGGGAGTCCTTGCGGACAAGGGGGAGGATAGGTGGGCGGATCATTCTCCCAAACCCTACGCTCACTATCTGAACTGTACATACTGCGTTGGGGTCAAAACTCAAGACCGCTCAGCATATGGTCAGTTCCTAATTTCTCTCCTTCTGAAGCGATGGAGGACTGAATCCAGTATTGGGGCTGGAGTAGGTCTCACTTGCTGATCATGTGACaaagggagggaatgagagagcgagaaagagatagAAAAGGGAGGCAGCACATGTGCAGAGTAGTAGTCTCCTCCTGGAGATGTGGCCGTAGCGGGGCCAGAGTCGGGAGGAGAAGCTATGTCCATTGTGTGTTGGCCAATAAGGGGGGCGATGAGGTCGGAGACGGAGGGTACCACTGCAGATTGGGGGAGCGAGAGGAGAAgggttctttctctctccacctctaaaTGTCttatgatgatgatggggatgaTATGTCAGCTATATTACAGTTCCCCTCCATTTCATTTACTGCACTCCCAGCACCGAACCACCCTACAACCCCTTGCCTGCAAAATCTACCCCTAAAAAGCAGAGAACGATAACAATGGCAACGGCATCAATGATTGAAatgataaaaagtaacacaaataATCACTCTCCTCTTCAAGTGTCTCGATAATAAAACAATAAGAACAATATTTTTTTATGACAATGAAGGAGACTTCTCTCTGTACTCTTTTGGCTAAAAATCTCAATATTCcccccaaaataaaaaaataaaagaaattTGACATCTGAAGACAtccaaaaatacaaaataataacaatataaaaaTGCCTCCCCAACACCTCCCCCCAAAAATATGATACAGAAATTGCAATCTATACATGGTGTCGCTgtacagaggaggaaggggaagaatGTCAGTTAAAACTACCCACAATGCCACACTGTCACAAGAGGGGGCAGGGGAGTGATGGGGagtggaaaaagagggaggaaggatggAATGAAGAACAgggggggggagaagggcatAAAACATGAGAGAACAGGGGAGTGagAATAAAAGATAGCATTGAACTGAAAGTGCAGAATTACGTAAGTAATCAAAACTAAAATGTTGTCCTCCTTGCAACacagaacatttttttttctttaataATAATTGTCATTATAATCATAATAACAATAAAacttattttacagtaaacagtaataacaataatagtaacaaTAATGATCATAACTTCTAGATGAACATTAGCCGtaaaaattaattttaaaaacaaTTAAGAAAAAGAACGACAGAAcaggaaaataaaatgtaaaaatgagAGCTGGTTGTGCTGTGCAATCCTTGATGTCACTGAGCtccattgtttgtttttttagcaCCCCTGAGCCTGAACCAAACCCATCCCCGCAAGCCCAACGTAATGGGTCATTCTGAGAGAGAGCCTCATAGGATCTGAGATCACAGTCCGCTCCGGAATGGTCCACCGGAATACagcggaggggagagggaggagcggACAGAACCTCACAGGAATCCCCACGCACAGACTTGGTGTGAATACTTTGGGTTTGTGGCTGAGTGTTTGCACGTGTATGTTTATGTGATCTATATATTTTGCCTGTATGATTGCCTGGGACATTGAGGTGCATGAGTATGTTGCTATGGCAACAGTTGGGGGAGGGGGACAACAAGGGGTAGGAAGGAAGAAGTGAATGGGGGTGGCAGAGCCCAATCTATCCAATCGGATGGAAGAGCAGAAATGGAGAGAGCCAATGATGGCAATGCTTGCTAGATGGCTGTGCAGAACAGAATGCTGGCATTGGACCCACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2346930 True 2059 lncRNA 0.43 2 12214128 12216225

Neighbor

gene id symbol gene type direction distance location
cd3e LOC100499597 coding upstream 20869 12189333 ~ 12193259 (+)
LOC110507545 LOC106612642 coding upstream 88395 10971980 ~ 12125733 (+)
LOC118944743 NA coding upstream 1242945 10966933 ~ 10971183 (+)
LOC110507544 LOC106580804 coding upstream 1300906 10814920 ~ 10913222 (+)
LOC110507543 NA coding upstream 1402122 10809948 ~ 10812006 (+)
LOC110507553 LOC106580818 coding downstream 66093 12282318 ~ 12303781 (+)
apoa-i-1 apoa-i-1 coding downstream 127580 12343805 ~ 12346332 (+)
LOC110507554 LOC106580899 coding downstream 132160 12348385 ~ 12353409 (+)
LOC110507072 LOC106580819 coding downstream 137332 12353557 ~ 12368584 (+)
pcsk7 LOC106580820 coding downstream 158338 12374563 ~ 12396767 (+)
G2051932 NA non-coding upstream 5021 12206807 ~ 12209107 (+)
G2051895 NA non-coding upstream 39358 12142057 ~ 12174770 (+)
G2051892 NA non-coding upstream 75675 12138180 ~ 12138453 (+)
G2051422 NA non-coding upstream 436731 11540455 ~ 11777397 (+)
G2051500 NA non-coding upstream 516374 11631891 ~ 11697754 (+)
G2051940 NA non-coding downstream 5466 12221691 ~ 12234948 (+)
G2051958 NA non-coding downstream 91286 12307511 ~ 12342066 (+)
G2052014 NA non-coding downstream 97103 12313328 ~ 12313977 (+)
G2051996 NA non-coding downstream 182287 12398512 ~ 12402555 (+)
G2051018 LOC106580809 other upstream 76329 12127441 ~ 12137799 (+)
G2051034 NA other upstream 1220540 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 1435761 10755190 ~ 10778403 (+)
rap1gap2a LOC106580794 other upstream 1631043 10494894 ~ 10583085 (+)
LOC110507524 LOC106612657 other upstream 1796833 10391240 ~ 10417311 (+)
nudt8 LOC106580825 other downstream 221734 12436060 ~ 12439501 (+)
G2053443 NA other downstream 762302 12978527 ~ 12978923 (+)
LOC110507618 LOC107659943 other downstream 1338515 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 2609295 14825520 ~ 14841123 (+)
G2056256 NA other downstream 3380808 15597033 ~ 15597651 (+)

Expression


Co-expression Network