Gene
RNA
| Item | Value |
|---|---|
| gene id | G2051940 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048591.1 |
| NCBI id | CM023245.2 |
| chromosome length | 51556237 |
| location | 12221691 ~ 12234948 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| serine/threonine-protein kinase SIK3 homolog isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2346939 | True | 257 | lncRNA | 0.57 | 2 | 12221691 | 12234948 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cd3e | LOC100499597 | coding | upstream | 28432 | 12189333 ~ 12193259 (+) |
| LOC110507545 | LOC106612642 | coding | upstream | 95958 | 10971980 ~ 12125733 (+) |
| LOC118944743 | NA | coding | upstream | 1250508 | 10966933 ~ 10971183 (+) |
| LOC110507544 | LOC106580804 | coding | upstream | 1308469 | 10814920 ~ 10913222 (+) |
| LOC110507543 | NA | coding | upstream | 1409685 | 10809948 ~ 10812006 (+) |
| LOC110507553 | LOC106580818 | coding | downstream | 47370 | 12282318 ~ 12303781 (+) |
| apoa-i-1 | apoa-i-1 | coding | downstream | 108857 | 12343805 ~ 12346332 (+) |
| LOC110507554 | LOC106580899 | coding | downstream | 113437 | 12348385 ~ 12353409 (+) |
| LOC110507072 | LOC106580819 | coding | downstream | 118609 | 12353557 ~ 12368584 (+) |
| pcsk7 | LOC106580820 | coding | downstream | 139615 | 12374563 ~ 12396767 (+) |
| G2051936 | NA | non-coding | upstream | 5466 | 12214128 ~ 12216225 (+) |
| G2051932 | NA | non-coding | upstream | 12584 | 12206807 ~ 12209107 (+) |
| G2051895 | NA | non-coding | upstream | 46921 | 12142057 ~ 12174770 (+) |
| G2051892 | NA | non-coding | upstream | 83238 | 12138180 ~ 12138453 (+) |
| G2051422 | NA | non-coding | upstream | 444294 | 11540455 ~ 11777397 (+) |
| G2051958 | NA | non-coding | downstream | 72563 | 12307511 ~ 12342066 (+) |
| G2052014 | NA | non-coding | downstream | 78380 | 12313328 ~ 12313977 (+) |
| G2051996 | NA | non-coding | downstream | 163564 | 12398512 ~ 12402555 (+) |
| G2052075 | NA | non-coding | downstream | 228667 | 12463615 ~ 12463855 (+) |
| G2051018 | LOC106580809 | other | upstream | 83892 | 12127441 ~ 12137799 (+) |
| G2051034 | NA | other | upstream | 1228103 | 10992985 ~ 10993588 (+) |
| LOC110507540 | git1 | other | upstream | 1443324 | 10755190 ~ 10778403 (+) |
| rap1gap2a | LOC106580794 | other | upstream | 1638606 | 10494894 ~ 10583085 (+) |
| LOC110507524 | LOC106612657 | other | upstream | 1804396 | 10391240 ~ 10417311 (+) |
| nudt8 | LOC106580825 | other | downstream | 203011 | 12436060 ~ 12439501 (+) |
| G2053443 | NA | other | downstream | 743579 | 12978527 ~ 12978923 (+) |
| LOC110507618 | LOC107659943 | other | downstream | 1319792 | 13554250 ~ 13575495 (+) |
| LOC110507180 | LOC106612536 | other | downstream | 2590572 | 14825520 ~ 14841123 (+) |
| G2056256 | NA | other | downstream | 3362085 | 15597033 ~ 15597651 (+) |
